ModCRE DB

Transcription factor

Q96FV9 - THOC1

THO complex subunit 1 (Nuclear matrix protein p84) (p84N5) (hTREX84)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 657 aa

2 Generated PWM 2 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE2
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f42_A_1 ModCRE Homology model TATTACTC Region 411-454 · 1 3D model Open · Scan
TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f44_A_1 ModCRE Homology model TTTGGCG Region 411-454 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 657 aa
411-454

Region 411-454 2 PWM

Residues
44 aa
Domains
PF11957 · THO complex subunit 1 transcription elongation factor
3D models
2 active PDBs · 2 summary rows
Templates
6F42, 6F44
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models 2 summary rows
Region 411-4542 models · 2 summary rows
Actions
Predicted = Low TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f42_A_1 6f42 411-454 View model · PDB
Predicted = Low TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f44_A_1 6f44 411-454 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6f42 411:454 411 454 P:A · DNA:X,Y 34.1% / 54.5% 3 View · PDB TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f42_A_1
2 6f44 411:454 411 454 P:A · DNA:X,Y 34.1% / 54.5% 3 View · PDB TFS_sp_Q96FV9_THOC1_HUMAN:411:454_6f44_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
71-538PF11957THO complex subunit 1 transcription elongation factoroverlaps 411-454
572-651PF00531Death domainNo overlap with loaded model regions