ModCRE DB

Transcription factor

Q96I27 - ZNF625

Zinc finger protein 625

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 306 aa

67 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)62
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 68.2% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 63.8% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 61.7% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.6% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 58.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 56.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 56.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 55.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.3% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 54.3% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 54.0% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 53.7% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 53.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 53.5% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 53.3% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 53.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.0% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 53.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 52.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 52.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.4% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 52.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 52.1% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 52.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 51.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.3% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 50.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.6% identity Open · Scan
M05855_2.00 NN 70-40% CisBP GTATTATACCCAGCT 50.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.6% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 50.5% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.4% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 50.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.1% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q96I27_ZN625_HUMAN:32:65_5v3j_E_1 ModCRE Homology model TTTCAAAGAAAT Region 32-65 · 1 3D model Open · Scan
TFS_sp_Q96I27_ZN625_HUMAN:32:65_5v3m_C_1 ModCRE Homology model CGTAAAGGAAAA Region 32-65 · 1 3D model Open · Scan
TFS_sp_Q96I27_ZN625_HUMAN:32:65_5wjq_D_1 ModCRE Homology model GTTAGCCAACAA Region 32-65 · 1 3D model Open · Scan
TFS_sp_Q96I27_ZN625_HUMAN:36:60_3uk3_D_1 ModCRE Homology model ATCGATGAG Region 36-60 · 1 3D model Open · Scan
TFS_sp_Q96I27_ZN625_HUMAN:36:60_4is1_D_1 ModCRE Homology model CGCGCGGGA Region 36-60 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 306 aa
32-292

Region 32-292 5 PWM

Residues
261 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 3UK3, 4IS1, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 32-29211 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q96I27_ZN625_HUMAN:235:283_1llm_D_1 1llm 235-283 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:143:287_2i13_A_1 2i13 143-287 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:32:65_5v3j_E_1 5v3j 32-65 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:32:65_5v3m_C_1 5v3m 32-65 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:32:65_5wjq_D_1 5wjq 32-65 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:36:60_3uk3_D_1 3uk3 36-60 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:36:60_4is1_D_1 4is1 36-60 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:65:288_5wjq_D_1 5wjq 65-288 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:66:292_7w1m_H_1 7w1m 66-292 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:68:292_5v3j_E_1 5v3j 68-292 View model · PDB
Predicted = Low TFS_sp_Q96I27_ZN625_HUMAN:68:292_5v3m_C_1 5v3m 68-292 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 65:292 143 287 P:A · DNA:C,D 57.2% / 73.1% 94 View · PDB TFS_sp_Q96I27_ZN625_HUMAN:143:287_2i13_A_1
1 5wjq 65:292 65 288 P:D · DNA:A,B 46.9% / 65.6% 79 View · PDB TFS_sp_Q96I27_ZN625_HUMAN:65:288_5wjq_D_1
1 1llm 65:292 235,235 283,283 P:C,D · DNA:A,B 46.9% / 63.3% 56,57 View · PDB DIMER_sp_Q96I27_ZN625_HUMAN:235:283_1llm_D_1
2 5v3m 65:292 68 292 P:C · DNA:A,B 46.2% / 66.7% 81 View · PDB TFS_sp_Q96I27_ZN625_HUMAN:68:292_5v3m_C_1
3 5v3j 65:292 68 292 P:E · DNA:A,B 46.2% / 66.7% 81 View · PDB TFS_sp_Q96I27_ZN625_HUMAN:68:292_5v3j_E_1
5 7w1m 65:292 66 292 P:H · DNA:F,G 33.6% / 50.9% 70 View · PDB TFS_sp_Q96I27_ZN625_HUMAN:66:292_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
97-119PF00096Zinc finger, C2H2 typeoverlaps 32-292
153-175PF00096Zinc finger, C2H2 typeoverlaps 32-292
181-203PF13912C2H2-type zinc fingeroverlaps 32-292
209-231PF00096Zinc finger, C2H2 typeoverlaps 32-292
237-259PF00096Zinc finger, C2H2 typeoverlaps 32-292