ModCRE DB

Transcription factor

Q96JC4 - ZNF479

Zinc finger protein 479 (Zinc finger protein Kr19) (HKr19)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 524 aa

86 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07673_2.00 Known CisBP CGAGTCCCCCGAGTCATC Direct PWM Open · Scan
Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 71.7% identity Open · Scan
Nearest Neighbor (70% - 40%)84
MotifPredictionSourceDNA bindingSupportLogoActions
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 69.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.0% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 68.0% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 67.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 67.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 65.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 62.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 62.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 62.1% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 61.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 61.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 61.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 60.9% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 60.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 60.7% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 60.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.0% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 58.7% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 58.7% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 58.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 58.4% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 58.3% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 58.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.8% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 57.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 56.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.5% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.2% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.2% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 56.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 56.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.7% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 55.6% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 55.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 55.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.1% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 55.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.5% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 54.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 54.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 53.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.5% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.5% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 51.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.6% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.3% identity Open · Scan
M00132_2.00 NN 70-40% CisBP TGCTACCGTT 51.2% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M01174_2.00 NN 70-40% CisBP GCTACCGT 50.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.6% identity Open · Scan
MA1542.1 NN 70-40% JASPAR TGCTACTGTT 50.6% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.3% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.0% identity Open · Scan
M04409_2.00 NN 70-40% CisBP GGCGGCCATTTTGG 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 50.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 524 aa
52-95

Region 52-95 0 PWM

Residues
44 aa
Domains
PF01352 · KRAB box
3D models
1 active PDB
Templates
1D66
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 52-951 model
Actions
Predicted = Low DIMER_Q96JC4:52:95_1d66_B_1 1d66 52-95 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
16-56PF01352KRAB boxoverlaps 52-95
241-263PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
269-291PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
297-319PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
326-347PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
353-375PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
381-403PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
409-431PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
437-459PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
465-487PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions