ModCRE DB

Transcription factor

Q96MM3 - ZFP42

Zinc finger protein 42 homolog (Zfp-42) (Reduced expression protein 1) (REX-1) (hREX-1) (Zinc finger protein 754)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 310 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1651.1 Known JASPAR GTTCCAAAATGGCTGCCTCCG Direct PWM Open · Scan
MA1651.2 Known JASPAR CAAAATGGCTGCC Direct PWM Open · Scan
M04581_2.00 Known CisBP TGGCAGCCATATTGG Direct PWM Open · Scan
M04582_2.00 Known CisBP TGGCGGCCATATTGG Direct PWM Open · Scan
M08348_2.00 Known CisBP GCAGCCATTTTG Direct PWM Open · Scan
M08927_2.00 Known CisBP GGCAGCCATTTT Direct PWM Open · Scan
ZFP42_HUMAN.H11MO.0.A Known HOCOMOCO GGCAGCCATTTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 310 aa
188-300

Region 188-300 0 PWM

Residues
113 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
1UBD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 188-3001 model
Actions
Predicted = Low TFS_Q96MM3:188:300_1ubd_C_1 1ubd 188-300 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
217-239PF00096Zinc finger, C2H2 typeoverlaps 188-300
245-269PF00096Zinc finger, C2H2 typeoverlaps 188-300
275-299PF00096Zinc finger, C2H2 typeoverlaps 188-300