ModCRE DB

Transcription factor

Q96MR9 - ZNF560

Zinc finger protein 560

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 790 aa

36 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)27
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 59.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 55.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.2% identity Open · Scan
M00640_2.00 NN 70-40% CisBP TGTGTGTG 52.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.3% identity Open · Scan
M03682_2.00 NN 70-40% CisBP ACGCCACGCCCAGT 51.2% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 51.2% identity Open · Scan
MA1564.1 NN 70-40% JASPAR GCCACGCCCCCC 51.2% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.0% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.8% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 50.2% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.0% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q96MR9_ZN560_HUMAN:214:342_2i13_A_1 ModCRE Homology model TTCTATATACAAAACCCCCCT Region 214-342 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:249:342_5eh2_F_1 ModCRE Homology model TAGGGGTGGACCTTTAATT Region 249-342 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5v3j_E_1 ModCRE Homology model TTTGCGCCGA Region 287-342 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5v3m_C_1 ModCRE Homology model TGTGTAGCGCG Region 287-342 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5wjq_D_1 ModCRE Homology model AGGCCTTTCAT Region 287-342 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3j_E_1 ModCRE Homology model CTCTCAGACCTGTCCCCCCTGGGGCC Region 375-651 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3m_C_1 ModCRE Homology model GGAATTTGCCTCCCCCCGCGCCCCCT Region 375-651 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:401:678_5wjq_D_1 ModCRE Homology model AGAATTTTCACCCCCCAGGGGTGGCCCC Region 401-678 · 1 3D model Open · Scan
TFS_sp_Q96MR9_ZN560_HUMAN:525:678_2i13_A_1 ModCRE Homology model CAATCTCAGCACGCACTGATG Region 525-678 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 790 aa
214-342
375-786

Region 214-342 5 PWM

Residues
129 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
2I13, 5EH2, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models

Region 375-786 4 PWM

Residues
412 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF13912 · C2H2-type zinc finger PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 214-3425 models
Actions
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:214:342_2i13_A_1 2i13 214-342 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:249:342_5eh2_F_1 5eh2 249-342 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5v3j_E_1 5v3j 287-342 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5v3m_C_1 5v3m 287-342 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:287:342_5wjq_D_1 5wjq 287-342 View model · PDB
Region 375-7866 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q96MR9_ZN560_HUMAN:709:758_1llm_D_1 1llm 709-758 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3j_E_1 5v3j 375-651 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3m_C_1 5v3m 375-651 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:401:678_5wjq_D_1 5wjq 401-678 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:488:786_7w1m_H_1 7w1m 488-786 View model · PDB
Predicted = Low TFS_sp_Q96MR9_ZN560_HUMAN:525:678_2i13_A_1 2i13 525-678 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 343:790 525 678 P:A · DNA:C,D 50.0% / 67.5% 100 View · PDB TFS_sp_Q96MR9_ZN560_HUMAN:525:678_2i13_A_1
3 5wjq 343:790 401 678 P:D · DNA:A,B 49.6% / 64.7% 98 View · PDB TFS_sp_Q96MR9_ZN560_HUMAN:401:678_5wjq_D_1
1 5v3m 343:790 375 651 P:C · DNA:A,B 49.1% / 64.6% 100 View · PDB TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3m_C_1
2 5v3j 343:790 375 651 P:E · DNA:A,B 49.1% / 64.6% 100 View · PDB TFS_sp_Q96MR9_ZN560_HUMAN:375:651_5v3j_E_1
1 1llm 343:790 709,709 758,758 P:C,D · DNA:A,B 44.0% / 64.0% 57,58 View · PDB DIMER_sp_Q96MR9_ZN560_HUMAN:709:758_1llm_D_1
5 7w1m 343:790 488 786 P:H · DNA:F,G 33.8% / 47.4% 92 View · PDB TFS_sp_Q96MR9_ZN560_HUMAN:488:786_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
12-53PF01352KRAB boxNo overlap with loaded model regions
109-150PF01352KRAB boxNo overlap with loaded model regions
348-370PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
376-398PF00096Zinc finger, C2H2 typeoverlaps 375-786
404-427PF13912C2H2-type zinc fingeroverlaps 375-786
432-454PF13912C2H2-type zinc fingeroverlaps 375-786
488-510PF13912C2H2-type zinc fingeroverlaps 375-786
516-538PF00096Zinc finger, C2H2 typeoverlaps 375-786
544-566PF00096Zinc finger, C2H2 typeoverlaps 375-786
572-594PF00096Zinc finger, C2H2 typeoverlaps 375-786
600-622PF00096Zinc finger, C2H2 typeoverlaps 375-786
632-650PF00096Zinc finger, C2H2 typeoverlaps 375-786
712-734PF00096Zinc finger, C2H2 typeoverlaps 375-786
740-762PF00096Zinc finger, C2H2 typeoverlaps 375-786
768-790PF13912C2H2-type zinc fingeroverlaps 375-786