ModCRE DB

Transcription factor

Q96MX3 - ZNF48

Zinc finger protein 48 (Zinc finger protein 553)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 618 aa

23 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.8% identity Open · Scan
M01432_2.00 NN 70-40% CisBP GACGCCAC 55.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 54.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 54.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 54.6% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 52.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 52.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 51.1% identity Open · Scan
M01439_2.00 NN 70-40% CisBP TTACGCCACA 51.0% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 50.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 50.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.4% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q96MX3_ZNF48_HUMAN:301:349_1llm_D_1 ModCRE Homology model TCCGGCGTGCGG Region 301-349 · 1 3D model Open · Scan
TFS_sp_Q96MX3_ZNF48_HUMAN:108:381_5wjq_D_1 ModCRE Homology model GGCGGGGGCGCCTGGCGGGGCCGCCCGG Region 108-381 · 1 3D model Open · Scan
TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3j_E_1 ModCRE Homology model TTCCCGGGGGGCGGCCGGTGTCGCTC Region 114-381 · 1 3D model Open · Scan
TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3m_C_1 ModCRE Homology model CGGGCGGGGGGGGCCAGACGCGCTGC Region 114-381 · 1 3D model Open · Scan
TFS_sp_Q96MX3_ZNF48_HUMAN:201:353_2i13_A_1 ModCRE Homology model ACTTAACTACAGGATCCGCGA Region 201-353 · 1 3D model Open · Scan
TFS_sp_Q96MX3_ZNF48_HUMAN:272:381_5ei9_E_1 ModCRE Homology model CCCCGGGGGGGGGAACA Region 272-381 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 618 aa
108-381

Region 108-381 6 PWM

Residues
274 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 108-3816 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q96MX3_ZNF48_HUMAN:301:349_1llm_D_1 1llm 301-349 View model · PDB
Predicted = Low TFS_sp_Q96MX3_ZNF48_HUMAN:108:381_5wjq_D_1 5wjq 108-381 View model · PDB
Predicted = Low TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3j_E_1 5v3j 114-381 View model · PDB
Predicted = Low TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3m_C_1 5v3m 114-381 View model · PDB
Predicted = Low TFS_sp_Q96MX3_ZNF48_HUMAN:201:353_2i13_A_1 2i13 201-353 View model · PDB
Predicted = Low TFS_sp_Q96MX3_ZNF48_HUMAN:272:381_5ei9_E_1 5ei9 272-381 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 107:382 272 381 P:E · DNA:A,B 53.6% / 68.2% 99 View · PDB TFS_sp_Q96MX3_ZNF48_HUMAN:272:381_5ei9_E_1
1 1llm 107:382 301,301 349,349 P:C,D · DNA:A,B 49.0% / 63.3% 56,57 View · PDB DIMER_sp_Q96MX3_ZNF48_HUMAN:301:349_1llm_D_1
4 2i13 107:382 201 353 P:A · DNA:C,D 48.7% / 57.8% 99 View · PDB TFS_sp_Q96MX3_ZNF48_HUMAN:201:353_2i13_A_1
2 5v3m 107:382 114 381 P:C · DNA:A,B 39.9% / 53.8% 96 View · PDB TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3m_C_1
3 5v3j 107:382 114 381 P:E · DNA:A,B 39.9% / 53.8% 96 View · PDB TFS_sp_Q96MX3_ZNF48_HUMAN:114:381_5v3j_E_1
1 5wjq 107:382 108 381 P:D · DNA:A,B 39.4% / 54.1% 97 View · PDB TFS_sp_Q96MX3_ZNF48_HUMAN:108:381_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
113-134PF00096Zinc finger, C2H2 typeoverlaps 108-381
140-162PF00096Zinc finger, C2H2 typeoverlaps 108-381
194-214PF00096Zinc finger, C2H2 typeoverlaps 108-381
220-242PF00096Zinc finger, C2H2 typeoverlaps 108-381
275-297PF00096Zinc finger, C2H2 typeoverlaps 108-381
305-325PF00096Zinc finger, C2H2 typeoverlaps 108-381
331-353PF00096Zinc finger, C2H2 typeoverlaps 108-381
359-381PF00096Zinc finger, C2H2 typeoverlaps 108-381
451-473PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
479-501PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
543-565PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
571-593PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions