ModCRE DB

Transcription factor

Q96ND8 - ZNF583

Zinc finger protein 583 (Zinc finger protein L3-5)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 569 aa

73 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)71
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 68.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 68.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 67.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 66.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 63.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 62.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 60.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 59.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 59.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 59.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 58.5% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 57.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.6% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 57.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 57.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.6% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 56.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 55.8% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 55.1% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 55.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.9% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 54.7% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 54.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.4% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 54.3% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 54.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.1% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 53.9% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 53.8% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 53.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 53.6% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 53.6% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 53.2% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 53.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.6% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.7% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 51.6% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 51.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.3% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 51.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.9% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.8% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.0% identity Open · Scan
ModCRE2
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q96ND8_ZN583_HUMAN:294:345_1llm_D_1 ModCRE Homology model CCCGGCGCCCGG Region 294-345 · 1 3D model Open · Scan
TFS_sp_Q96ND8_ZN583_HUMAN:265:375_5ei9_E_1 ModCRE Homology model GCCCCTGGGTGGGGGCCC Region 265-375 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 569 aa
213-515

Region 213-515 2 PWM

Residues
303 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 213-5157 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q96ND8_ZN583_HUMAN:294:345_1llm_D_1 1llm 294-345 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:213:487_5v3j_E_1 5v3j 213-487 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:213:487_5v3m_C_1 5v3m 213-487 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:213:510_7w1m_H_1 7w1m 213-510 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:221:374_2i13_A_1 2i13 221-374 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:237:515_5wjq_D_1 5wjq 237-515 View model · PDB
Predicted = Low TFS_sp_Q96ND8_ZN583_HUMAN:265:375_5ei9_E_1 5ei9 265-375 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 212:545 221 374 P:A · DNA:C,D 61.7% / 72.1% 100 View · PDB TFS_sp_Q96ND8_ZN583_HUMAN:221:374_2i13_A_1
1 5wjq 212:545 237 515 P:D · DNA:A,B 56.6% / 71.0% 99 View · PDB TFS_sp_Q96ND8_ZN583_HUMAN:237:515_5wjq_D_1
2 5v3m 212:545 213 487 P:C · DNA:A,B 54.9% / 70.9% 99 View · PDB TFS_sp_Q96ND8_ZN583_HUMAN:213:487_5v3m_C_1
3 5v3j 212:545 213 487 P:E · DNA:A,B 54.9% / 70.9% 99 View · PDB TFS_sp_Q96ND8_ZN583_HUMAN:213:487_5v3j_E_1
1 1llm 212:545 294,294 345,345 P:C,D · DNA:A,B 46.2% / 63.5% 59,61 View · PDB DIMER_sp_Q96ND8_ZN583_HUMAN:294:345_1llm_D_1
5 7w1m 212:545 213 510 P:H · DNA:F,G 34.5% / 50.8% 92 View · PDB TFS_sp_Q96ND8_ZN583_HUMAN:213:510_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
213-234PF00096Zinc finger, C2H2 typeoverlaps 213-515
240-262PF00096Zinc finger, C2H2 typeoverlaps 213-515
268-290PF00096Zinc finger, C2H2 typeoverlaps 213-515
296-318PF00096Zinc finger, C2H2 typeoverlaps 213-515
324-346PF00096Zinc finger, C2H2 typeoverlaps 213-515
352-374PF00096Zinc finger, C2H2 typeoverlaps 213-515
380-402PF00096Zinc finger, C2H2 typeoverlaps 213-515
408-430PF00096Zinc finger, C2H2 typeoverlaps 213-515
436-458PF00096Zinc finger, C2H2 typeoverlaps 213-515
464-486PF00096Zinc finger, C2H2 typeoverlaps 213-515
492-514PF00096Zinc finger, C2H2 typeoverlaps 213-515
520-542PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions