Transcription factor

Q96NL3 - ZNF599

Zinc finger protein 599

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 588 aa

74 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)64

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	63.5% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	63.4% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	61.1% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	61.1% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	60.5% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	60.0% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	60.0% identity		Open · Scan
M07613_2.00	NN 70-40%	CisBP	TCACTCAGTCATTCA	59.3% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	58.8% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	58.8% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	58.8% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	57.6% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	57.6% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	57.6% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	57.6% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	57.1% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	56.8% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	56.6% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	56.5% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	56.4% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	56.2% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	56.0% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	56.0% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	55.7% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	55.6% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	55.6% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	55.6% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	55.4% identity		Open · Scan
M08263_2.00	NN 70-40%	CisBP	ATCTCGGCACTTTGGGAGGCCA	55.4% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	54.9% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	54.3% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	53.9% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	53.9% identity		Open · Scan
M07770_2.00	NN 70-40%	CisBP	CTTGGACTT	53.8% identity		Open · Scan
M08887_2.00	NN 70-40%	CisBP	CCTCCTCCAGGAAGCCTTCCCTGA	53.6% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	53.4% identity		Open · Scan
M08320_2.00	NN 70-40%	CisBP	TTCCCTGCC	53.2% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	53.2% identity		Open · Scan
M07725_2.00	NN 70-40%	CisBP	AAGCACTGTACT	53.0% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	52.6% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	52.5% identity		Open · Scan
M07731_2.00	NN 70-40%	CisBP	TTTCCCAGCAGCAACAGCACCGCCCCCCCC	52.5% identity		Open · Scan
M07747_2.00	NN 70-40%	CisBP	TGGTCTATAAAGGGCCTGGTT	52.5% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	52.3% identity		Open · Scan
M10303_2.00	NN 70-40%	CisBP	TACTGGGAATACC	52.3% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	52.1% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	51.8% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	51.7% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	51.7% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	51.6% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	51.3% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	51.3% identity		Open · Scan
M07717_2.00	NN 70-40%	CisBP	GGCTCCGCCCCC	51.2% identity		Open · Scan
M07727_2.00	NN 70-40%	CisBP	CGCCGCCTCCCC	50.8% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	50.8% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	50.7% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	50.7% identity		Open · Scan
M07684_2.00	NN 70-40%	CisBP	CCTGTTCTTGACTTT	50.7% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	50.7% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	50.6% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	50.5% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	50.2% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	50.1% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	50.0% identity		Open · Scan

ModCRE10

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_sp_Q96NL3_ZN599_HUMAN:533:584_1llm_D_1	ModCRE	Homology model	CCCGGGCCCCGG	Region 533-584 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3j_E_1	ModCRE	Homology model	CCCCCCGGGAGGGGGGGGGGGGGCGG	Region 226-502 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3m_C_1	ModCRE	Homology model	CCCCCGGGGGGGGCCCGGGGTTCGCA	Region 226-502 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:252:530_5wjq_D_1	ModCRE	Homology model	CCCGGGGGGGGCGAACGGGTGAGCGGGC	Region 252-530 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:320:473_2i13_A_1	ModCRE	Homology model	TCAAAGTAGAGGTAGTAGAAT	Region 320-473 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:532:585_4gzn_C_1	ModCRE	Homology model	CTAGCTAAAT	Region 532-585 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:532:585_4m9v_C_1	ModCRE	Homology model	CTTACTATAT	Region 532-585 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:533:586_1f2i_G_1	ModCRE	Homology model	TAGTAGGGCGG	Region 533-586 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:533:586_1f2i_H_1	ModCRE	Homology model	AATTCTTACTA	Region 533-586 · 1 3D model		Open · Scan
TFS_sp_Q96NL3_ZN599_HUMAN:536:585_4is1_D_1	ModCRE	Homology model	GGCGACCCCG	Region 536-585 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 588 aa

226-530

532-586

Region 226-530 4 PWM

Residues

305 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

5 active PDBs · 5 summary rows

Templates

2I13, 5V3J, 5V3M, 5WJQ, 7W1M

Sources

Predicted = Low

Scan this region Show models

Region 532-586 6 PWM

Residues

55 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

6 active PDBs · 1 summary row

Templates

1F2I, 1LLM, 4GZN, 4IS1, 4M9V

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

11 active PDB models 6 summary rows

Region 226-5305 models · 5 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3j_E_1	5v3j	226-502	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3m_C_1	5v3m	226-502	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:227:525_7w1m_H_1	7w1m	227-525	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:252:530_5wjq_D_1	5wjq	252-530	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:320:473_2i13_A_1	2i13	320-473	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	5wjq	198:587	252	530	P:D · DNA:A,B	51.6% / 67.4%	99	View · PDB TFS_sp_Q96NL3_ZN599_HUMAN:252:530_5wjq_D_1
4	2i13	198:587	320	473	P:A · DNA:C,D	50.6% / 64.3%	100	View · PDB TFS_sp_Q96NL3_ZN599_HUMAN:320:473_2i13_A_1
2	5v3m	198:587	226	502	P:C · DNA:A,B	50.2% / 66.1%	100	View · PDB TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3m_C_1
3	5v3j	198:587	226	502	P:E · DNA:A,B	50.2% / 66.1%	100	View · PDB TFS_sp_Q96NL3_ZN599_HUMAN:226:502_5v3j_E_1
5	7w1m	198:587	227	525	P:H · DNA:F,G	32.8% / 47.4%	92	View · PDB TFS_sp_Q96NL3_ZN599_HUMAN:227:525_7w1m_H_1

Region 532-5866 models · 1 summary row

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_sp_Q96NL3_ZN599_HUMAN:533:584_1llm_D_1	1llm	533-584	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:532:585_4gzn_C_1	4gzn	532-585	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:532:585_4m9v_C_1	4m9v	532-585	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:533:586_1f2i_G_1	1f2i	533-586	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:533:586_1f2i_H_1	1f2i	533-586	View model · PDB
Predicted = Low	TFS_sp_Q96NL3_ZN599_HUMAN:536:585_4is1_D_1	4is1	536-585	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	1llm	198:587	533,533	584,584	P:C,D · DNA:A,B	50.0% / 65.4%	59,61	View · PDB DIMER_sp_Q96NL3_ZN599_HUMAN:533:584_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
8-49	PF01352	KRAB box	No overlap with loaded model regions
199-221	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
227-249	PF00096	Zinc finger, C2H2 type	overlaps 226-530
255-277	PF00096	Zinc finger, C2H2 type	overlaps 226-530
283-305	PF00096	Zinc finger, C2H2 type	overlaps 226-530
311-333	PF00096	Zinc finger, C2H2 type	overlaps 226-530
339-361	PF00096	Zinc finger, C2H2 type	overlaps 226-530
367-389	PF00096	Zinc finger, C2H2 type	overlaps 226-530
395-417	PF00096	Zinc finger, C2H2 type	overlaps 226-530
423-445	PF00096	Zinc finger, C2H2 type	overlaps 226-530
451-473	PF00096	Zinc finger, C2H2 type	overlaps 226-530
480-501	PF00096	Zinc finger, C2H2 type	overlaps 226-530
507-529	PF00096	Zinc finger, C2H2 type	overlaps 226-530
535-557	PF00096	Zinc finger, C2H2 type	overlaps 532-586
563-585	PF00096	Zinc finger, C2H2 type	overlaps 532-586