Region 239-302 3 PWM
- Residues
- 64 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 1J5N, 2GZK, 3NM9, 6CIJ
- Sources
- Predicted = Low
Transcription factor
Q96NM4 - TOX2
TOX high mobility group box family member 2 (Granulosa cell HMG box protein 1) (GCX-1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 488 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q96NM4_TOX2_HUMAN:239:302_1j5n_A_1 | ModCRE | Homology model | GTGAAAAAAAACTTT | Region 239-302 · 1 3D model | Open · Scan | |
| TFS_sp_Q96NM4_TOX2_HUMAN:239:302_2gzk_A_1 | ModCRE | Homology model | ATGGGGTATTAATCCC | Region 239-302 · 1 3D model | Open · Scan | |
| TFS_sp_Q96NM4_TOX2_HUMAN:246:302_6cij_N_1 | ModCRE | Homology model | AACGGGGATATTTACCC | Region 246-302 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
488 aa
239-302
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models
4 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 239-3024 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q96NM4_TOX2_HUMAN:239:302_1j5n_A_1 | 1j5n | 239-302 | View model · PDB |
| Predicted = Low | TFS_sp_Q96NM4_TOX2_HUMAN:239:302_2gzk_A_1 | 2gzk | 239-302 | View model · PDB |
| Predicted = Low | TFS_sp_Q96NM4_TOX2_HUMAN:246:302_6cij_N_1 | 6cij | 246-302 | View model · PDB |
| Predicted = Low | TFS_sp_Q96NM4_TOX2_HUMAN:253:301_3nm9_P_1 | 3nm9 | 253-301 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 6cij | 239:314 | 246 | 302 | P:N · DNA:G,M | 43.9% / 64.9% | 41 | View · PDB TFS_sp_Q96NM4_TOX2_HUMAN:246:302_6cij_N_1 |
| 1 | 2gzk | 239:314 | 239 | 302 | P:A · DNA:B,C | 42.2% / 62.5% | 40 | View · PDB TFS_sp_Q96NM4_TOX2_HUMAN:239:302_2gzk_A_1 |
| 3 | 1j5n | 239:314 | 239 | 302 | P:A · DNA:B,C | 37.5% / 59.4% | 68 | View · PDB TFS_sp_Q96NM4_TOX2_HUMAN:239:302_1j5n_A_1 |
| 4 | 3nm9 | 239:314 | 253 | 301 | P:P · DNA:E,F,H,I,K,L | 28.6% / 63.3% | 67 | View · PDB TFS_sp_Q96NM4_TOX2_HUMAN:253:301_3nm9_P_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 255-302 | PF00505 | HMG (high mobility group) box | overlaps 239-302 |