Region 1013-1039 1 PWM
- Residues
- 27 aa
- Domains
- PF13912 · C2H2-type zinc finger
- 3D models
- 1 active PDB
- Templates
- 1A1H
- Sources
- Predicted = Low
Transcription factor
Q96PN7 - TRERF1
Transcriptional-regulating factor 1 (Breast cancer anti-estrogen resistance 2) (Transcriptional-regulating protein 132) (Zinc finger protein rapa) (Zinc finger transcription factor TReP-132)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1200 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q96PN7_TREF1_HUMAN:1013:1039_1a1h_A_1 | ModCRE | Homology model | TAACATTG | Region 1013-1039 · 1 3D model | Open · Scan | |
| TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_1p47_A_1 | ModCRE | Homology model | GGTAGGTTTAA | Region 1086-1111 · 1 3D model | Open · Scan | |
| TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_4r2d_A_1 | ModCRE | Homology model | GTAGTTCGT | Region 1086-1111 · 1 3D model | Open · Scan | |
| TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_1g2d_C_1 | ModCRE | Homology model | CGCTGGTCCCCG | Region 1086-1112 · 1 3D model | Open · Scan | |
| TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_1g2f_C_1 | ModCRE | Homology model | CGCGAGTCTCCG | Region 1086-1112 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1200 aa
1013-1039
1086-1112
Region 1086-1112 4 PWM
- Residues
- 27 aa
- Domains
- PF13912 · C2H2-type zinc finger
- 3D models
- 9 active PDBs · 5 summary rows
- Templates
- 1G2D, 1G2F, 1P47, 4R2D, 6ML3, 6ML4, 6ML6, 6ML7, ...
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1013-10391 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1013:1039_1a1h_A_1 | 1a1h | 1013-1039 | View model · PDB |
Region 1086-11129 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_1p47_A_1 | 1p47 | 1086-1111 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_4r2d_A_1 | 4r2d | 1086-1111 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_6ml3_A_1 | 6ml3 | 1086-1111 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_1g2d_C_1 | 1g2d | 1086-1112 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_1g2f_C_1 | 1g2f | 1086-1112 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml4_A_1 | 6ml4 | 1086-1112 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml6_A_1 | 6ml6 | 1086-1112 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml7_A_1 | 6ml7 | 1086-1112 | View model · PDB |
| Predicted = Low | TFS_sp_Q96PN7_TREF1_HUMAN:1088:1108_6wmi_A_1 | 6wmi | 1088-1108 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6wmi | 1083:1135 | 1088 | 1108 | P:A · DNA:E,F | 52.4% / 66.7% | 14 | View · PDB TFS_sp_Q96PN7_TREF1_HUMAN:1088:1108_6wmi_A_1 |
| 2 | 6ml3 | 1083:1135 | 1086 | 1111 | P:A · DNA:E,F | 38.5% / 61.5% | 23 | View · PDB TFS_sp_Q96PN7_TREF1_HUMAN:1086:1111_6ml3_A_1 |
| 3 | 6ml7 | 1083:1135 | 1086 | 1112 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml7_A_1 |
| 4 | 6ml6 | 1083:1135 | 1086 | 1112 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml6_A_1 |
| 5 | 6ml4 | 1083:1135 | 1086 | 1112 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_sp_Q96PN7_TREF1_HUMAN:1086:1112_6ml4_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 514-534 | PF13912 | C2H2-type zinc finger | No overlap with loaded model regions |
| 781-835 | PF01448 | ELM2 domain | No overlap with loaded model regions |
| 1020-1035 | PF13912 | C2H2-type zinc finger | overlaps 1013-1039 |
| 1086-1111 | PF13912 | C2H2-type zinc finger | overlaps 1086-1112 |