q96qc0.af3.0 ModCRE
AlphaFold3 model
AAAAACGGCGGGGCCCTT
AlphaFold3 model · ModCRE PWM
TPosition 1, T: probability 0.127, stack 0.35 bits CPosition 1, C: probability 0.147, stack 0.35 bits GPosition 1, G: probability 0.150, stack 0.35 bits APosition 1, A: probability 0.576, stack 0.35 bits TPosition 2, T: probability 0.097, stack 0.47 bits GPosition 2, G: probability 0.119, stack 0.47 bits CPosition 2, C: probability 0.156, stack 0.47 bits APosition 2, A: probability 0.628, stack 0.47 bits TPosition 3, T: probability 0.101, stack 0.43 bits CPosition 3, C: probability 0.121, stack 0.43 bits GPosition 3, G: probability 0.166, stack 0.43 bits APosition 3, A: probability 0.612, stack 0.43 bits CPosition 4, C: probability 0.185, stack 0.36 bits GPosition 4, G: probability 0.195, stack 0.36 bits APosition 4, A: probability 0.553, stack 0.36 bits GPosition 5, G: probability 0.164, stack 0.32 bits CPosition 5, C: probability 0.204, stack 0.32 bits APosition 5, A: probability 0.546, stack 0.32 bits GPosition 6, G: probability 0.365, stack 0.75 bits CPosition 6, C: probability 0.583, stack 0.75 bits CPosition 7, C: probability 0.373, stack 0.71 bits GPosition 7, G: probability 0.569, stack 0.71 bits TPosition 8, T: probability 0.040, stack 0.89 bits APosition 8, A: probability 0.052, stack 0.89 bits CPosition 8, C: probability 0.147, stack 0.89 bits GPosition 8, G: probability 0.761, stack 0.89 bits GPosition 9, G: probability 0.309, stack 0.88 bits CPosition 9, C: probability 0.655, stack 0.88 bits TPosition 10, T: probability 0.040, stack 1.12 bits CPosition 10, C: probability 0.115, stack 1.12 bits GPosition 10, G: probability 0.826, stack 1.12 bits CPosition 11, C: probability 0.182, stack 1.07 bits GPosition 11, G: probability 0.782, stack 1.07 bits APosition 12, A: probability 0.040, stack 0.93 bits TPosition 12, T: probability 0.058, stack 0.93 bits CPosition 12, C: probability 0.121, stack 0.93 bits GPosition 12, G: probability 0.781, stack 0.93 bits APosition 13, A: probability 0.103, stack 0.47 bits TPosition 13, T: probability 0.118, stack 0.47 bits CPosition 13, C: probability 0.148, stack 0.47 bits GPosition 13, G: probability 0.631, stack 0.47 bits GPosition 14, G: probability 0.058, stack 1.02 bits APosition 14, A: probability 0.127, stack 1.02 bits CPosition 14, C: probability 0.797, stack 1.02 bits GPosition 15, G: probability 0.053, stack 0.71 bits TPosition 15, T: probability 0.088, stack 0.71 bits APosition 15, A: probability 0.147, stack 0.71 bits CPosition 15, C: probability 0.712, stack 0.71 bits GPosition 16, G: probability 0.102, stack 0.50 bits APosition 16, A: probability 0.107, stack 0.50 bits TPosition 16, T: probability 0.149, stack 0.50 bits CPosition 16, C: probability 0.642, stack 0.50 bits GPosition 17, G: probability 0.115, stack 0.39 bits CPosition 17, C: probability 0.130, stack 0.39 bits APosition 17, A: probability 0.158, stack 0.39 bits TPosition 17, T: probability 0.597, stack 0.39 bits CPosition 18, C: probability 0.127, stack 0.35 bits APosition 18, A: probability 0.136, stack 0.35 bits GPosition 18, G: probability 0.160, stack 0.35 bits TPosition 18, T: probability 0.577, stack 0.35 bits Open · Scan
q96qc0.af3.1 ModCRE
AlphaFold3 model
GAATTTAAAAACCGGGGGTT
AlphaFold3 model · ModCRE PWM
TPosition 1, T: probability 0.323, stack 0.92 bits GPosition 1, G: probability 0.651, stack 0.92 bits TPosition 2, T: probability 0.067, stack 1.53 bits APosition 2, A: probability 0.918, stack 1.53 bits TPosition 3, T: probability 0.301, stack 1.00 bits APosition 3, A: probability 0.683, stack 1.00 bits CPosition 4, C: probability 0.372, stack 1.01 bits TPosition 4, T: probability 0.624, stack 1.01 bits APosition 5, A: probability 0.039, stack 1.68 bits TPosition 5, T: probability 0.951, stack 1.68 bits GPosition 6, G: probability 0.161, stack 0.35 bits APosition 6, A: probability 0.186, stack 0.35 bits TPosition 6, T: probability 0.566, stack 0.35 bits APosition 7, A: probability 0.453, stack 0.14 bits CPosition 8, C: probability 0.144, stack 0.60 bits TPosition 8, T: probability 0.215, stack 0.60 bits APosition 8, A: probability 0.624, stack 0.60 bits TPosition 9, T: probability 0.056, stack 1.47 bits APosition 9, A: probability 0.913, stack 1.47 bits TPosition 10, T: probability 0.047, stack 1.55 bits APosition 10, A: probability 0.931, stack 1.55 bits CPosition 11, C: probability 0.028, stack 1.70 bits APosition 11, A: probability 0.958, stack 1.70 bits APosition 12, A: probability 0.205, stack 0.52 bits GPosition 12, G: probability 0.261, stack 0.52 bits CPosition 12, C: probability 0.532, stack 0.52 bits GPosition 13, G: probability 0.176, stack 1.31 bits CPosition 13, C: probability 0.822, stack 1.31 bits CPosition 14, C: probability 0.098, stack 1.52 bits GPosition 14, G: probability 0.900, stack 1.52 bits CPosition 15, C: probability 0.030, stack 1.77 bits GPosition 15, G: probability 0.967, stack 1.77 bits CPosition 16, C: probability 0.019, stack 1.83 bits GPosition 16, G: probability 0.978, stack 1.83 bits GPosition 17, G: probability 0.975, stack 1.80 bits APosition 18, A: probability 0.144, stack 0.44 bits TPosition 18, T: probability 0.230, stack 0.44 bits GPosition 18, G: probability 0.577, stack 0.44 bits TPosition 19, T: probability 0.440, stack 0.12 bits Open · Scan
q96qc0.af3.2 ModCRE
AlphaFold3 model
GGGCCTAATTTCACGAAT
AlphaFold3 model · ModCRE PWM
CPosition 1, C: probability 0.178, stack 0.34 bits APosition 1, A: probability 0.268, stack 0.34 bits GPosition 1, G: probability 0.505, stack 0.34 bits CPosition 2, C: probability 0.250, stack 0.28 bits APosition 2, A: probability 0.268, stack 0.28 bits GPosition 2, G: probability 0.441, stack 0.28 bits TPosition 3, T: probability 0.054, stack 0.69 bits APosition 3, A: probability 0.063, stack 0.69 bits CPosition 3, C: probability 0.196, stack 0.69 bits GPosition 3, G: probability 0.687, stack 0.69 bits GPosition 4, G: probability 0.166, stack 0.50 bits TPosition 4, T: probability 0.186, stack 0.50 bits CPosition 4, C: probability 0.610, stack 0.50 bits GPosition 5, G: probability 0.162, stack 0.41 bits TPosition 5, T: probability 0.215, stack 0.41 bits CPosition 5, C: probability 0.570, stack 0.41 bits APosition 6, A: probability 0.120, stack 0.33 bits CPosition 6, C: probability 0.145, stack 0.33 bits GPosition 6, G: probability 0.172, stack 0.33 bits TPosition 6, T: probability 0.563, stack 0.33 bits GPosition 7, G: probability 0.069, stack 0.80 bits TPosition 7, T: probability 0.178, stack 0.80 bits APosition 7, A: probability 0.722, stack 0.80 bits CPosition 8, C: probability 0.076, stack 0.72 bits TPosition 8, T: probability 0.211, stack 0.72 bits APosition 8, A: probability 0.683, stack 0.72 bits APosition 9, A: probability 0.028, stack 1.33 bits GPosition 9, G: probability 0.102, stack 1.33 bits TPosition 9, T: probability 0.869, stack 1.33 bits GPosition 10, G: probability 0.260, stack 1.15 bits TPosition 10, T: probability 0.738, stack 1.15 bits CPosition 11, C: probability 0.058, stack 1.64 bits TPosition 11, T: probability 0.938, stack 1.64 bits APosition 12, A: probability 0.084, stack 1.54 bits CPosition 12, C: probability 0.912, stack 1.54 bits TPosition 13, T: probability 0.143, stack 1.35 bits APosition 13, A: probability 0.851, stack 1.35 bits TPosition 14, T: probability 0.187, stack 1.17 bits CPosition 14, C: probability 0.794, stack 1.17 bits APosition 15, A: probability 0.129, stack 0.46 bits TPosition 15, T: probability 0.199, stack 0.46 bits GPosition 15, G: probability 0.606, stack 0.46 bits GPosition 16, G: probability 0.142, stack 0.74 bits TPosition 16, T: probability 0.190, stack 0.74 bits APosition 16, A: probability 0.666, stack 0.74 bits TPosition 17, T: probability 0.221, stack 0.88 bits APosition 17, A: probability 0.720, stack 0.88 bits GPosition 18, G: probability 0.066, stack 0.56 bits CPosition 18, C: probability 0.083, stack 0.56 bits APosition 18, A: probability 0.208, stack 0.56 bits TPosition 18, T: probability 0.643, stack 0.56 bits Open · Scan
q96qc0.af3.3 ModCRE
AlphaFold3 model
ACACACCAACAAAAAGTTTA
AlphaFold3 model · ModCRE PWM
APosition 1, A: probability 0.490, stack 0.19 bits TPosition 2, T: probability 0.111, stack 0.38 bits GPosition 2, G: probability 0.146, stack 0.38 bits APosition 2, A: probability 0.152, stack 0.38 bits CPosition 2, C: probability 0.591, stack 0.38 bits TPosition 3, T: probability 0.182, stack 1.14 bits APosition 3, A: probability 0.794, stack 1.14 bits APosition 4, A: probability 0.099, stack 0.75 bits GPosition 4, G: probability 0.198, stack 0.75 bits CPosition 4, C: probability 0.688, stack 0.75 bits CPosition 5, C: probability 0.258, stack 0.44 bits TPosition 5, T: probability 0.308, stack 0.44 bits APosition 5, A: probability 0.433, stack 0.44 bits APosition 6, A: probability 0.021, stack 1.72 bits CPosition 6, C: probability 0.962, stack 1.72 bits APosition 7, A: probability 0.116, stack 1.39 bits CPosition 7, C: probability 0.874, stack 1.39 bits CPosition 8, C: probability 0.063, stack 1.39 bits APosition 8, A: probability 0.898, stack 1.39 bits TPosition 9, T: probability 0.154, stack 0.65 bits CPosition 9, C: probability 0.210, stack 0.65 bits APosition 9, A: probability 0.631, stack 0.65 bits APosition 10, A: probability 0.162, stack 0.67 bits TPosition 10, T: probability 0.185, stack 0.67 bits CPosition 10, C: probability 0.646, stack 0.67 bits GPosition 11, G: probability 0.160, stack 0.23 bits CPosition 11, C: probability 0.213, stack 0.23 bits APosition 11, A: probability 0.502, stack 0.23 bits APosition 12, A: probability 0.441, stack 0.13 bits TPosition 13, T: probability 0.234, stack 0.24 bits APosition 13, A: probability 0.503, stack 0.24 bits TPosition 14, T: probability 0.216, stack 0.23 bits APosition 14, A: probability 0.506, stack 0.23 bits APosition 15, A: probability 0.451, stack 0.14 bits APosition 16, A: probability 0.147, stack 0.43 bits CPosition 16, C: probability 0.223, stack 0.43 bits GPosition 16, G: probability 0.578, stack 0.43 bits CPosition 17, C: probability 0.151, stack 0.45 bits APosition 17, A: probability 0.233, stack 0.45 bits TPosition 17, T: probability 0.574, stack 0.45 bits APosition 18, A: probability 0.398, stack 0.93 bits TPosition 18, T: probability 0.588, stack 0.93 bits APosition 19, A: probability 0.423, stack 0.96 bits TPosition 19, T: probability 0.571, stack 0.96 bits TPosition 20, T: probability 0.066, stack 0.80 bits GPosition 20, G: probability 0.069, stack 0.80 bits CPosition 20, C: probability 0.117, stack 0.80 bits APosition 20, A: probability 0.748, stack 0.80 bits Open · Scan
q96qc0.af3.4 ModCRE
AlphaFold3 model
CGGGGTGATCA
AlphaFold3 model · ModCRE PWM
APosition 1, A: probability 0.246, stack 0.32 bits GPosition 1, G: probability 0.325, stack 0.32 bits CPosition 1, C: probability 0.405, stack 0.32 bits TPosition 2, T: probability 0.047, stack 0.80 bits CPosition 2, C: probability 0.310, stack 0.80 bits GPosition 2, G: probability 0.636, stack 0.80 bits TPosition 3, T: probability 0.059, stack 1.63 bits GPosition 3, G: probability 0.937, stack 1.63 bits TPosition 4, T: probability 0.436, stack 0.97 bits GPosition 4, G: probability 0.560, stack 0.97 bits CPosition 5, C: probability 0.161, stack 0.54 bits TPosition 5, T: probability 0.313, stack 0.54 bits GPosition 5, G: probability 0.524, stack 0.54 bits GPosition 6, G: probability 0.187, stack 0.43 bits CPosition 6, C: probability 0.398, stack 0.43 bits TPosition 6, T: probability 0.405, stack 0.43 bits TPosition 7, T: probability 0.050, stack 1.67 bits GPosition 7, G: probability 0.946, stack 1.67 bits APosition 8, A: probability 0.979, stack 1.83 bits APosition 9, A: probability 0.128, stack 1.41 bits TPosition 9, T: probability 0.868, stack 1.41 bits APosition 10, A: probability 0.389, stack 0.53 bits CPosition 10, C: probability 0.506, stack 0.53 bits Open · Scan
q96qc0.af3.5 ModCRE
AlphaFold3 model
AAAAACGGCGGGGCCCTT
AlphaFold3 model · ModCRE PWM
CPosition 1, C: probability 0.136, stack 0.34 bits TPosition 1, T: probability 0.140, stack 0.34 bits GPosition 1, G: probability 0.153, stack 0.34 bits APosition 1, A: probability 0.571, stack 0.34 bits TPosition 2, T: probability 0.106, stack 0.43 bits GPosition 2, G: probability 0.140, stack 0.43 bits CPosition 2, C: probability 0.142, stack 0.43 bits APosition 2, A: probability 0.612, stack 0.43 bits CPosition 3, C: probability 0.128, stack 0.41 bits TPosition 3, T: probability 0.130, stack 0.41 bits GPosition 3, G: probability 0.137, stack 0.41 bits APosition 3, A: probability 0.605, stack 0.41 bits CPosition 4, C: probability 0.157, stack 0.35 bits GPosition 4, G: probability 0.213, stack 0.35 bits APosition 4, A: probability 0.555, stack 0.35 bits GPosition 5, G: probability 0.169, stack 0.33 bits CPosition 5, C: probability 0.188, stack 0.33 bits APosition 5, A: probability 0.553, stack 0.33 bits GPosition 6, G: probability 0.363, stack 0.75 bits CPosition 6, C: probability 0.586, stack 0.75 bits CPosition 7, C: probability 0.389, stack 0.71 bits GPosition 7, G: probability 0.552, stack 0.71 bits TPosition 8, T: probability 0.042, stack 0.85 bits APosition 8, A: probability 0.044, stack 0.85 bits CPosition 8, C: probability 0.173, stack 0.85 bits GPosition 8, G: probability 0.741, stack 0.85 bits GPosition 9, G: probability 0.326, stack 0.89 bits CPosition 9, C: probability 0.644, stack 0.89 bits TPosition 10, T: probability 0.041, stack 1.16 bits CPosition 10, C: probability 0.106, stack 1.16 bits GPosition 10, G: probability 0.837, stack 1.16 bits APosition 11, A: probability 0.046, stack 1.04 bits CPosition 11, C: probability 0.145, stack 1.04 bits GPosition 11, G: probability 0.795, stack 1.04 bits APosition 12, A: probability 0.052, stack 0.92 bits TPosition 12, T: probability 0.052, stack 0.92 bits CPosition 12, C: probability 0.113, stack 0.92 bits GPosition 12, G: probability 0.783, stack 0.92 bits TPosition 13, T: probability 0.115, stack 0.45 bits APosition 13, A: probability 0.118, stack 0.45 bits CPosition 13, C: probability 0.145, stack 0.45 bits GPosition 13, G: probability 0.622, stack 0.45 bits GPosition 14, G: probability 0.066, stack 0.96 bits APosition 14, A: probability 0.126, stack 0.96 bits CPosition 14, C: probability 0.785, stack 0.96 bits GPosition 15, G: probability 0.053, stack 0.73 bits TPosition 15, T: probability 0.101, stack 0.73 bits APosition 15, A: probability 0.125, stack 0.73 bits CPosition 15, C: probability 0.721, stack 0.73 bits APosition 16, A: probability 0.087, stack 0.47 bits GPosition 16, G: probability 0.110, stack 0.47 bits TPosition 16, T: probability 0.182, stack 0.47 bits CPosition 16, C: probability 0.621, stack 0.47 bits GPosition 17, G: probability 0.126, stack 0.35 bits APosition 17, A: probability 0.138, stack 0.35 bits CPosition 17, C: probability 0.161, stack 0.35 bits TPosition 17, T: probability 0.575, stack 0.35 bits GPosition 18, G: probability 0.143, stack 0.30 bits APosition 18, A: probability 0.151, stack 0.30 bits CPosition 18, C: probability 0.152, stack 0.30 bits TPosition 18, T: probability 0.554, stack 0.30 bits Open · Scan