ModCRE DB

Transcription factor

Q96RE9 - ZNF300

Zinc finger protein 300

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 604 aa

80 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07594_2.00 Known CisBP CAGACCCCCAAACACCGCACACACTACAT Direct PWM Open · Scan
Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70+% CisBP ATCTATAT 70.5% identity Open · Scan
M00955_2.00 NN 70+% CisBP ACGTCCTCT 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 69.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 68.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 67.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 67.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 66.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 63.5% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 63.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.5% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 62.4% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 62.3% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 62.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 62.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 61.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 61.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 60.0% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 60.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 59.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 59.4% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 59.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 58.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 58.6% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 58.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 57.9% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 57.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.8% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 57.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.7% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 57.6% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.8% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.5% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 56.3% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 56.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 56.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 56.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 56.1% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 56.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 54.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.8% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 54.7% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 54.7% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 54.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.8% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 53.6% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 53.5% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.2% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 52.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.7% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 52.6% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.2% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.0% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 52.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.0% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.6% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.6% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.5% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.0% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 604 aa
266-432

Region 266-432 0 PWM

Residues
167 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5UND
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 266-4321 model
Actions
Predicted = Low TFS_Q96RE9:266:432_5und_A_1 5und 266-432 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
7-48PF01352KRAB boxNo overlap with loaded model regions
270-291PF00096Zinc finger, C2H2 typeoverlaps 266-432
297-319PF00096Zinc finger, C2H2 typeoverlaps 266-432
325-347PF00096Zinc finger, C2H2 typeoverlaps 266-432
353-375PF00096Zinc finger, C2H2 typeoverlaps 266-432
381-403PF00096Zinc finger, C2H2 typeoverlaps 266-432
409-431PF00096Zinc finger, C2H2 typeoverlaps 266-432
437-459PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
465-487PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
493-515PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
521-543PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
549-571PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
577-599PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions