ModCRE DB

Transcription factor

Q96SV5

cDNA FLJ14612 fis, clone NT2RP1001013, highly similar to ZINC FINGER PROTEIN 83

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 516 aa

114 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)105
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 69.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 68.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 63.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 63.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 63.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 61.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 61.4% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 61.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 60.3% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 60.2% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 59.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 59.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 58.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.4% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 58.4% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 58.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.2% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 58.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 57.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.2% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 57.0% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.9% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.5% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 56.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.9% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 55.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.5% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 55.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.6% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.5% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.4% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 54.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 53.9% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 53.8% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.8% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 53.7% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.6% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 53.6% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 53.6% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.5% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 53.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 53.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 53.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.1% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 53.1% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 53.1% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 53.0% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 53.0% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 53.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 52.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.5% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.3% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.3% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 52.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.2% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 51.7% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 51.5% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 51.2% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 50.6% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.6% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.5% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.5% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.2% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q96SV5_Q96SV5_HUMAN:315:388_1llm_D_1 ModCRE Homology model ATCGCGGCCGGA Region 315-388 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:146:424_5wjq_D_1 ModCRE Homology model CCGGGGGGGGGGGTTCGCGGAGTGGGGC Region 146-424 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3j_E_1 ModCRE Homology model CCCCCTGCATGGGGGAGGTCCCCCGG Region 148-424 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3m_C_1 ModCRE Homology model CCCGGACACCGGGGGGGGGGGTCGGG Region 148-424 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:230:340_5ei9_E_1 ModCRE Homology model CCCAGGGGGGGGGGTAG Region 230-340 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:270:423_2i13_A_1 ModCRE Homology model CGGCTTTAGTGTCTTGTTAGT Region 270-423 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:457:510_4gzn_C_1 ModCRE Homology model ACCTACCGCC Region 457-510 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:457:510_4m9v_C_1 ModCRE Homology model CCCCACCCCC Region 457-510 · 1 3D model Open · Scan
TFS_tr_Q96SV5_Q96SV5_HUMAN:459:507_5yj3_C_1 ModCRE Homology model TCGGG Region 459-507 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 516 aa
146-447
457-510

Region 146-447 6 PWM

Residues
302 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models

Region 457-510 3 PWM

Residues
54 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
3 active PDBs
Templates
4GZN, 4M9V, 5YJ3
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 146-4477 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q96SV5_Q96SV5_HUMAN:315:388_1llm_D_1 1llm 315-388 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:146:424_5wjq_D_1 5wjq 146-424 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3j_E_1 5v3j 148-424 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3m_C_1 5v3m 148-424 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:149:447_7w1m_H_1 7w1m 149-447 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:230:340_5ei9_E_1 5ei9 230-340 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:270:423_2i13_A_1 2i13 270-423 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 95:482 270 423 P:A · DNA:C,D 59.7% / 66.9% 100 View · PDB TFS_tr_Q96SV5_Q96SV5_HUMAN:270:423_2i13_A_1
1 5wjq 95:482 146 424 P:D · DNA:A,B 54.5% / 67.7% 99 View · PDB TFS_tr_Q96SV5_Q96SV5_HUMAN:146:424_5wjq_D_1
2 5v3m 95:482 148 424 P:C · DNA:A,B 53.4% / 67.1% 100 View · PDB TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3m_C_1
3 5v3j 95:482 148 424 P:E · DNA:A,B 53.4% / 67.1% 100 View · PDB TFS_tr_Q96SV5_Q96SV5_HUMAN:148:424_5v3j_E_1
1 1llm 95:482 315,315 388,388 P:C,D · DNA:A,B 37.8% / 55.4% 83,85 View · PDB DIMER_tr_Q96SV5_Q96SV5_HUMAN:315:388_1llm_D_1
5 7w1m 95:482 149 447 P:H · DNA:F,G 36.4% / 51.3% 92 View · PDB TFS_tr_Q96SV5_Q96SV5_HUMAN:149:447_7w1m_H_1
Region 457-5103 models
Actions
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:457:510_4gzn_C_1 4gzn 457-510 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:457:510_4m9v_C_1 4m9v 457-510 View model · PDB
Predicted = Low TFS_tr_Q96SV5_Q96SV5_HUMAN:459:507_5yj3_C_1 5yj3 459-507 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
121-143PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
149-171PF00096Zinc finger, C2H2 typeoverlaps 146-447
177-199PF00096Zinc finger, C2H2 typeoverlaps 146-447
205-227PF00096Zinc finger, C2H2 typeoverlaps 146-447
233-255PF00096Zinc finger, C2H2 typeoverlaps 146-447
261-283PF00096Zinc finger, C2H2 typeoverlaps 146-447
289-311PF00096Zinc finger, C2H2 typeoverlaps 146-447
317-339PF00096Zinc finger, C2H2 typeoverlaps 146-447
345-367PF00096Zinc finger, C2H2 typeoverlaps 146-447
373-395PF00096Zinc finger, C2H2 typeoverlaps 146-447
401-423PF00096Zinc finger, C2H2 typeoverlaps 146-447
429-451PF00096Zinc finger, C2H2 typeoverlaps 146-447
457-479PF00096Zinc finger, C2H2 typeoverlaps 457-510
485-507PF00096Zinc finger, C2H2 typeoverlaps 457-510