ModCRE DB

Transcription factor

Q96T25 - ZIC5

Zinc finger protein ZIC 5 (Zinc finger protein of the cerebellum 5)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 639 aa

4 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known4
MotifPredictionSourceDNA bindingSupportLogoActions
MA1584.1 Known JASPAR CGACCCCCCGCTGTGC Direct PWM Open · Scan
MA1584.2 Known JASPAR GACCCCCCGCTGTGC Direct PWM Open · Scan
M04471_2.00 Known CisBP CGACCCCCCGCTGTGC Direct PWM Open · Scan
M04472_2.00 Known CisBP AGACCCCCTGCTGTGA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 639 aa
407-549

Region 407-549 0 PWM

Residues
143 aa
Domains
PF18366 · Zic proteins zinc finger domain PF23561 · C2H2 zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2GLI
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 407-5491 model
Actions
Predicted = Low TFS_Q96T25:407:549_2gli_A_1 2gli 407-549 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
403-429PF18366Zic proteins zinc finger domainoverlaps 407-549
436-465PF23561C2H2 zinc fingeroverlaps 407-549
467-491PF00096Zinc finger, C2H2 typeoverlaps 407-549
527-551PF00096Zinc finger, C2H2 typeoverlaps 407-549