ModCRE DB

Transcription factor

Q99453 - PHOX2B

Paired mesoderm homeobox protein 2B (Neuroblastoma Phox) (NBPhox) (PHOX2B homeodomain protein) (Paired-like homeobox 2B)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 314 aa

14 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known14
MotifPredictionSourceDNA bindingSupportLogoActions
MA0681.1 Known JASPAR TAATTTAATTA Direct PWM Open · Scan
MA0681.2 Known JASPAR TTTAATCAAATTATAT Direct PWM Open · Scan
MA0681.3 Known JASPAR TAATCAAATTAT Direct PWM Open · Scan
M00278_2.00 Known CisBP CCCTAAT Direct PWM Open · Scan
M00279_2.00 Known CisBP CATAATTACTG Direct PWM Open · Scan
M00280_2.00 Known CisBP ATACATAATTACT Direct PWM Open · Scan
M00281_2.00 Known CisBP CCCCCCTAAT Direct PWM Open · Scan
M00282_2.00 Known CisBP TAATTAGT Direct PWM Open · Scan
M03113_2.00 Known CisBP TAATTAAATTA Direct PWM Open · Scan
M03114_2.00 Known CisBP TAATTAAATTA Direct PWM Open · Scan
M05008_2.00 Known CisBP CTAATTGC Direct PWM Open · Scan
M05009_2.00 Known CisBP GTAATTGC Direct PWM Open · Scan
M05010_2.00 Known CisBP TAATTAGATTA Direct PWM Open · Scan
M05011_2.00 Known CisBP TAATTAGATTA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 314 aa
100-155

Region 100-155 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1DU0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 100-1551 model
Actions
Predicted = Low DIMER_Q99453:100:155_1du0_B_1 1du0 100-155 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
99-155PF00046Homeodomainoverlaps 100-155