ModCRE DB

Transcription factor

Q99684 - GFI1

Zinc finger protein Gfi-1 (Growth factor independent protein 1) (Zinc finger protein 163)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 422 aa

10 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known10
MotifPredictionSourceDNA bindingSupportLogoActions
MA0038.2 Known JASPAR CAAATCACTGCA Direct PWM Open · Scan
MA0038.3 Known JASPAR AAATCACTGCA Direct PWM Open · Scan
M00236_2.00 Known CisBP AAATCACAG Direct PWM Open · Scan
M00237_2.00 Known CisBP ATATCACG Direct PWM Open · Scan
M00238_2.00 Known CisBP AAATCAGAG Direct PWM Open · Scan
M04507_2.00 Known CisBP CAAATCACTGCACCTCACTCC Direct PWM Open · Scan
M04508_2.00 Known CisBP GGAGTGAAATGCAGTGATTTC Direct PWM Open · Scan
M08905_2.00 Known CisBP AAATCACAGC Direct PWM Open · Scan
M10235_2.00 Known CisBP GGCATATGCTGTGATTTATTTTGT Direct PWM Open · Scan
GFI1_HUMAN.H11MO.0.C Known HOCOMOCO GCTGTGATTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 422 aa
251-416

Region 251-416 0 PWM

Residues
166 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 251-4161 model
Actions
Predicted = Low TFS_Q99684:251:416_5v3j_E_1 5v3j 251-416 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
255-278PF00096Zinc finger, C2H2 typeoverlaps 251-416
284-306PF00096Zinc finger, C2H2 typeoverlaps 251-416
312-334PF00096Zinc finger, C2H2 typeoverlaps 251-416
340-362PF00096Zinc finger, C2H2 typeoverlaps 251-416
368-390PF00096Zinc finger, C2H2 typeoverlaps 251-416
398-419PF00096Zinc finger, C2H2 typeoverlaps 251-416