Transcription factor

Q99743 - NPAS2

Neuronal PAS domain-containing protein 2 (Neuronal PAS2) (Basic-helix-loop-helix-PAS protein MOP4) (Class E basic helix-loop-helix protein 9) (bHLHe9) (Member of PAS protein 4) (PAS domain-containing protein 4)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 824 aa

2 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M04158_2.00	Known	CisBP	TACACGTGTC	Direct PWM		Open · Scan
M04159_2.00	Known	CisBP	TACACATGTC	Direct PWM		Open · Scan

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 824 aa

3-57

Region 3-57 0 PWM

Residues: 55 aa
Domains: PF00010 · Helix-loop-helix DNA-binding domain
3D models: 1 active PDB
Templates: 1HLO
Sources: Structure model

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

1 active PDB model

Region 3-571 model

				Actions
Predicted = Low	DIMER_Q99743:3:57_1hlo_A_1	1hlo	3-57	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
10-57	PF00010	Helix-loop-helix DNA-binding domain	overlaps 3-57
85-156	PF00989	PAS fold	No overlap with loaded model regions
249-352	PF14598	PAS domain	No overlap with loaded model regions