ModCRE DB

Transcription factor

Q99801 - NKX3-1

Homeobox protein Nkx-3.1 (Homeobox protein NK-3 homolog A)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 234 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0124.1 Known JASPAR ATACTTA Direct PWM Open · Scan
M05255_2.00 Known CisBP GTTAAGTGGT Direct PWM Open · Scan
M05256_2.00 Known CisBP GTTAAGTGGT Direct PWM Open · Scan
M05257_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M09154_2.00 Known CisBP GTTAAGTGCTTT Direct PWM Open · Scan
M09559_2.00 Known CisBP TTAAGTGCTT Direct PWM Open · Scan
M10730_2.00 Known CisBP AAATAAGTATAT Direct PWM Open · Scan
NKX31_HUMAN.H11MO.0.C Known HOCOMOCO GTTAAGTGCTTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 234 aa
124-180

Region 124-180 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 124-1801 model
Actions
Predicted = Low DIMER_Q99801:124:180_3rkq_A_1 3rkq 124-180 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
125-181PF00046Homeodomainoverlaps 124-180