Transcription factor

Q99856 - ARID3A

AT-rich interactive domain-containing protein 3A (ARID domain-containing protein 3A) (B-cell regulator of IgH transcription) (Bright) (Dead ringer-like protein 1) (E2F-binding protein 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 593 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5

Motif	Prediction	Source	DNA binding	Support	Actions
M01658_2.00	NN 70+%	CisBP	TAATTAAAA	90.2% identity	Open · Scan
MA0151.1	NN 70+%	JASPAR	ATTAAA	80.3% identity	Open · Scan
M01664_2.00	NN 70+%	CisBP	TAATCAAA	78.6% identity	Open · Scan
M01667_2.00	NN 70+%	CisBP	CAATTAAA	75.5% identity	Open · Scan
M01662_2.00	NN 70+%	CisBP	TAATTAAAA	74.8% identity	Open · Scan

Nearest Neighbor (70% - 40%)2

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M01655_2.00	NN 70-40%	CisBP	TAATTAAAA	62.7% identity		Open · Scan
MA0601.1	NN 70-40%	JASPAR	ATATTAATTAA	57.2% identity		Open · Scan

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 593 aa

223-349

Region 223-349 0 PWM

Residues: 127 aa
Domains: PF01388 · ARID/BRIGHT DNA binding domain
3D models: 1 active PDB
Templates: 1KQQ
Sources: Structure model

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

1 active PDB model

Region 223-3491 model

				Actions
Predicted = Low	TFS_Q99856:223:349_1kqq_A_1	1kqq	223-349	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
241-326	PF01388	ARID/BRIGHT DNA binding domain	overlaps 223-349