ModCRE DB

Transcription factor

Q9BQR2 - UBTF

Upstream binding transcription factor, RNA polymerase I

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 158 aa

5 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jgh_A_1 ModCRE Homology model TATATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Region 112-158 · 1 3D model Open · Scan
TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jgh_D_1 ModCRE Homology model TATTAAATTAATTTAAT Region 112-158 · 1 3D model Open · Scan
TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jh0_A_1 ModCRE Homology model TTAAAATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Region 112-158 · 1 3D model Open · Scan
TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jh0_D_1 ModCRE Homology model AATTAAATTTAATTATT Region 112-158 · 1 3D model Open · Scan
TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_6hc3_A_1 ModCRE Homology model GAGTTTATAATA Region 112-158 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 158 aa
112-158

Region 112-158 5 PWM

Residues
47 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
9 active PDBs · 5 summary rows
Templates
4NNU, 5JGH, 5JH0, 6HC3, 7LBW, 7LBX
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 5 summary rows
Region 112-1589 models · 5 summary rows
Actions
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_4nnu_B_1 4nnu 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jgh_A_1 5jgh 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jgh_D_1 5jgh 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jh0_A_1 5jh0 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_5jh0_D_1 5jh0 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_6hc3_A_1 6hc3 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbw_B_1 7lbw 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbx_A_1 7lbx 112-158 View model · PDB
Predicted = Low TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbx_B_1 7lbx 112-158 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6hc3 103:158 112 158 P:A · DNA:B,C 31.9% / 63.8% 24 View · PDB TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_6hc3_A_1
2 4nnu 103:158 112 158 P:B · DNA:C,D,E,F 31.9% / 63.8% 24 View · PDB TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_4nnu_B_1
3 7lbx 103:158 112 158 P:B · DNA:C,D,E,F 31.9% / 63.8% 24 View · PDB TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbx_B_1
4 7lbx 103:158 112 158 P:A · DNA:C,D,E,F 31.9% / 63.8% 24 View · PDB TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbx_A_1
5 7lbw 103:158 112 158 P:B · DNA:C,D,E,F 31.9% / 63.8% 24 View · PDB TFS_tr_Q9BQR2_Q9BQR2_HUMAN:112:158_7lbw_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
112-158PF00505HMG (high mobility group) boxoverlaps 112-158