ModCRE DB

Transcription factor

Q9BR84 - ZNF559

Zinc finger protein 559

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 538 aa

56 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)47
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 58.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.8% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 57.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 55.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.6% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 52.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.2% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.1% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 51.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 51.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.6% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5egb_A_1 ModCRE Homology model CCGTTTTAACAC Region 176-200 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5eh2_F_1 ModCRE Homology model CCTTCTTTACAC Region 176-200 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5ei9_E_1 ModCRE Homology model AGGGGGTCCCAA Region 176-200 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:176:201_2i13_A_1 ModCRE Homology model AAATCAGCGGTA Region 176-201 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:177:201_4is1_D_1 ModCRE Homology model CCAAAACGCA Region 177-201 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:208:488_5wjq_D_1 ModCRE Homology model CCAACCGCCCCCCCCCACCCATCCCCCC Region 208-488 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3j_E_1 ModCRE Homology model CACCTGTGCCCGGGGGTTTGGTACA Region 268-535 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3m_C_1 ModCRE Homology model CGGACCCCACCCGCCCCCGCCCCCGA Region 268-535 · 1 3D model Open · Scan
TFS_sp_Q9BR84_ZN559_HUMAN:334:487_2i13_A_1 ModCRE Homology model AAAGACACACTAAAGCTAGAA Region 334-487 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 538 aa
176-201
208-535

Region 176-201 5 PWM

Residues
26 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
2I13, 4IS1, 5EGB, 5EH2, 5EI9
Sources
Predicted = Low
Scan this region Show models

Region 208-535 4 PWM

Residues
328 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 176-2015 models
Actions
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5egb_A_1 5egb 176-200 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5eh2_F_1 5eh2 176-200 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:176:200_5ei9_E_1 5ei9 176-200 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:176:201_2i13_A_1 2i13 176-201 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:177:201_4is1_D_1 4is1 177-201 View model · PDB
Region 208-5356 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9BR84_ZN559_HUMAN:351:399_1llm_D_1 1llm 351-399 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:208:488_5wjq_D_1 5wjq 208-488 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:231:511_7w1m_H_1 7w1m 231-511 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3j_E_1 5v3j 268-535 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3m_C_1 5v3m 268-535 View model · PDB
Predicted = Low TFS_sp_Q9BR84_ZN559_HUMAN:334:487_2i13_A_1 2i13 334-487 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 208:535 334 487 P:A · DNA:C,D 51.3% / 70.8% 100 View · PDB TFS_sp_Q9BR84_ZN559_HUMAN:334:487_2i13_A_1
1 1llm 208:535 351,351 399,399 P:C,D · DNA:A,B 51.0% / 67.3% 56,57 View · PDB DIMER_sp_Q9BR84_ZN559_HUMAN:351:399_1llm_D_1
2 5v3m 208:535 268 535 P:C · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3m_C_1
3 5v3j 208:535 268 535 P:E · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_sp_Q9BR84_ZN559_HUMAN:268:535_5v3j_E_1
1 5wjq 208:535 208 488 P:D · DNA:A,B 47.0% / 64.4% 100 View · PDB TFS_sp_Q9BR84_ZN559_HUMAN:208:488_5wjq_D_1
5 7w1m 208:535 231 511 P:H · DNA:F,G 34.5% / 50.0% 87 View · PDB TFS_sp_Q9BR84_ZN559_HUMAN:231:511_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-54PF01352KRAB boxNo overlap with loaded model regions
241-263PF00096Zinc finger, C2H2 typeoverlaps 208-535
297-319PF00096Zinc finger, C2H2 typeoverlaps 208-535
325-347PF00096Zinc finger, C2H2 typeoverlaps 208-535
353-375PF00096Zinc finger, C2H2 typeoverlaps 208-535
381-403PF00096Zinc finger, C2H2 typeoverlaps 208-535
409-431PF00096Zinc finger, C2H2 typeoverlaps 208-535
437-459PF00096Zinc finger, C2H2 typeoverlaps 208-535
465-487PF00096Zinc finger, C2H2 typeoverlaps 208-535
493-515PF00096Zinc finger, C2H2 typeoverlaps 208-535