ModCRE DB

Transcription factor

Q9BRH9 - ZNF251

Zinc finger protein 251

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 671 aa

69 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)68
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 64.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 64.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 64.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 62.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 62.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.7% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 57.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 57.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 57.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 56.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 56.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.3% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 55.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.7% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 54.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 54.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.6% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 54.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.7% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.7% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.4% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 53.4% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 53.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.1% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 52.8% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 52.0% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.9% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 51.5% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.2% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.2% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.7% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 50.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M03682_2.00 NN 70-40% CisBP ACGCCACGCCCAGT 50.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.0% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 50.0% identity Open · Scan
MA1564.1 NN 70-40% JASPAR GCCACGCCCCCC 50.0% identity Open · Scan
ModCRE1
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9BRH9_ZN251_HUMAN:402:512_5ei9_E_1 ModCRE Homology model GGGCACCGGCGCGGGCG Region 402-512 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 671 aa
209-512

Region 209-512 1 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 209-5127 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9BRH9_ZN251_HUMAN:403:454_1llm_D_1 1llm 403-454 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:209:507_7w1m_H_1 7w1m 209-507 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:234:512_5wjq_D_1 5wjq 234-512 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:236:512_5v3j_E_1 5v3j 236-512 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:236:512_5v3m_C_1 5v3m 236-512 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:330:483_2i13_A_1 2i13 330-483 View model · PDB
Predicted = Low TFS_sp_Q9BRH9_ZN251_HUMAN:402:512_5ei9_E_1 5ei9 402-512 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 200:514 330 483 P:A · DNA:C,D 57.1% / 70.8% 100 View · PDB TFS_sp_Q9BRH9_ZN251_HUMAN:330:483_2i13_A_1
2 5v3m 200:514 236 512 P:C · DNA:A,B 53.1% / 67.5% 100 View · PDB TFS_sp_Q9BRH9_ZN251_HUMAN:236:512_5v3m_C_1
3 5v3j 200:514 236 512 P:E · DNA:A,B 53.1% / 67.5% 100 View · PDB TFS_sp_Q9BRH9_ZN251_HUMAN:236:512_5v3j_E_1
1 5wjq 200:514 234 512 P:D · DNA:A,B 52.3% / 68.1% 99 View · PDB TFS_sp_Q9BRH9_ZN251_HUMAN:234:512_5wjq_D_1
1 1llm 200:514 403,403 454,454 P:C,D · DNA:A,B 48.1% / 63.5% 59,61 View · PDB DIMER_sp_Q9BRH9_ZN251_HUMAN:403:454_1llm_D_1
5 7w1m 200:514 209 507 P:H · DNA:F,G 37.3% / 52.6% 92 View · PDB TFS_sp_Q9BRH9_ZN251_HUMAN:209:507_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-55PF01352KRAB boxNo overlap with loaded model regions
209-231PF00096Zinc finger, C2H2 typeoverlaps 209-512
237-259PF00096Zinc finger, C2H2 typeoverlaps 209-512
265-287PF00096Zinc finger, C2H2 typeoverlaps 209-512
295-315PF00096Zinc finger, C2H2 typeoverlaps 209-512
321-343PF00096Zinc finger, C2H2 typeoverlaps 209-512
349-371PF00096Zinc finger, C2H2 typeoverlaps 209-512
377-399PF00096Zinc finger, C2H2 typeoverlaps 209-512
405-427PF00096Zinc finger, C2H2 typeoverlaps 209-512
433-455PF00096Zinc finger, C2H2 typeoverlaps 209-512
461-483PF00096Zinc finger, C2H2 typeoverlaps 209-512
489-511PF00096Zinc finger, C2H2 typeoverlaps 209-512
594-616PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions