ModCRE DB

Transcription factor

Q9BSG1 - ZNF2

Zinc finger protein 2 (Zinc finger protein 2.2) (Zinc finger protein 661)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 425 aa

79 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07780_2.00 Known CisBP AGCGCCCCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)74
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 60.9% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 59.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 59.2% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 58.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 58.8% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 58.6% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 58.4% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 58.0% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 57.9% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 57.8% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 57.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.1% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.9% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 56.8% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 56.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 56.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.3% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 56.2% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 56.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 55.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 55.5% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 55.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.3% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 55.3% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 54.7% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 54.7% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 54.5% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 54.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 54.3% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 54.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.2% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 54.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 53.5% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 53.4% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 53.4% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 53.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 52.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.7% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 52.6% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.3% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 52.2% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 52.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.8% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 51.6% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.4% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3j_E_1 ModCRE Homology model CGGTGTCAGGCCACCCCCCCCGGGGT Region 161-392 · 1 3D model Open · Scan
TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3m_C_1 ModCRE Homology model CCCCCCGGACGCCCCCACCGCGGGGG Region 161-392 · 1 3D model Open · Scan
TFS_sp_Q9BSG1_ZNF2_HUMAN:161:417_5wjq_D_1 ModCRE Homology model CCCGCCCCCCCCGCCCCCCGCCGCCCCC Region 161-417 · 1 3D model Open · Scan
TFS_sp_Q9BSG1_ZNF2_HUMAN:239:391_2i13_A_1 ModCRE Homology model TTGCCGAGTAAGCAGGCAATT Region 239-391 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 425 aa
158-419

Region 158-419 4 PWM

Residues
262 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 158-4196 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9BSG1_ZNF2_HUMAN:367:416_1llm_D_1 1llm 367-416 View model · PDB
Predicted = Low TFS_sp_Q9BSG1_ZNF2_HUMAN:158:419_7w1m_H_1 7w1m 158-419 View model · PDB
Predicted = Low TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3j_E_1 5v3j 161-392 View model · PDB
Predicted = Low TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3m_C_1 5v3m 161-392 View model · PDB
Predicted = Low TFS_sp_Q9BSG1_ZNF2_HUMAN:161:417_5wjq_D_1 5wjq 161-417 View model · PDB
Predicted = Low TFS_sp_Q9BSG1_ZNF2_HUMAN:239:391_2i13_A_1 2i13 239-391 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 158:419 239 391 P:A · DNA:C,D 55.2% / 69.5% 99 View · PDB TFS_sp_Q9BSG1_ZNF2_HUMAN:239:391_2i13_A_1
1 5wjq 158:419 161 417 P:D · DNA:A,B 53.7% / 67.3% 91 View · PDB TFS_sp_Q9BSG1_ZNF2_HUMAN:161:417_5wjq_D_1
2 5v3m 158:419 161 392 P:C · DNA:A,B 53.4% / 67.7% 83 View · PDB TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3m_C_1
3 5v3j 158:419 161 392 P:E · DNA:A,B 53.4% / 67.7% 83 View · PDB TFS_sp_Q9BSG1_ZNF2_HUMAN:161:392_5v3j_E_1
1 1llm 158:419 367,367 416,416 P:C,D · DNA:A,B 44.0% / 62.0% 57,58 View · PDB DIMER_sp_Q9BSG1_ZNF2_HUMAN:367:416_1llm_D_1
5 7w1m 158:419 158 419 P:H · DNA:F,G 39.0% / 51.7% 81 View · PDB TFS_sp_Q9BSG1_ZNF2_HUMAN:158:419_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-54PF01352KRAB boxNo overlap with loaded model regions
174-195PF00096Zinc finger, C2H2 typeoverlaps 158-419
201-223PF00096Zinc finger, C2H2 typeoverlaps 158-419
229-251PF00096Zinc finger, C2H2 typeoverlaps 158-419
257-279PF00096Zinc finger, C2H2 typeoverlaps 158-419
285-307PF00096Zinc finger, C2H2 typeoverlaps 158-419
313-335PF00096Zinc finger, C2H2 typeoverlaps 158-419
341-363PF00096Zinc finger, C2H2 typeoverlaps 158-419
369-391PF00096Zinc finger, C2H2 typeoverlaps 158-419
397-418PF00096Zinc finger, C2H2 typeoverlaps 158-419