ModCRE DB

Transcription factor

Q9BT81 - SOX7

Transcription factor SOX-7

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 388 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
M03516_2.00 Known CisBP AACAATGTTCATTGTT Direct PWM Open · Scan
M03517_2.00 Known CisBP AAACAATTGCATTGTTT Direct PWM Open · Scan
M03518_2.00 Known CisBP GATGAATTTCAGTCATG Direct PWM Open · Scan
M05787_2.00 Known CisBP ACAATGACATTGT Direct PWM Open · Scan
M05788_2.00 Known CisBP ACAATGTCATTGT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 388 aa
42-119

Region 42-119 0 PWM

Residues
78 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 42-1191 model
Actions
Predicted = Low TFS_Q9BT81:42:119_1j46_A_1 1j46 42-119 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
46-113PF00505HMG (high mobility group) boxoverlaps 42-119
192-231PF12067Sox 17/18 central domainNo overlap with loaded model regions