ModCRE DB

Transcription factor

Q9BW11 - MXD3

Max dimerization protein 3 (Max dimerizer 3) (Class C basic helix-loop-helix protein 13) (bHLHc13) (Max-associated protein 3) (Max-interacting transcriptional repressor MAD3) (Myx)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 206 aa

7 Generated PWM 14 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M08051_2.00 NN 70-40% CisBP CGACCACGTGCCC 55.5% identity Open · Scan
MA1108.1 NN 70-40% JASPAR CGACCACGTGCCC 51.6% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9BW11_MAD3_HUMAN:53:139_1nkp_A_1 ModCRE Homology model AGAAACACACACGGACCC Region 53-139 · 1 3D model Open · Scan
DIMER_sp_Q9BW11_MAD3_HUMAN:59:136_1nlw_A_1 ModCRE Homology model AGGGCGCGTGTGGGTCAC Region 59-136 · 1 3D model Open · Scan
TFS_sp_Q9BW11_MAD3_HUMAN:53:139_1nkp_A_1 ModCRE Homology model TATAACCACGTCTTTTTT Region 53-139 · 1 3D model Open · Scan
TFS_sp_Q9BW11_MAD3_HUMAN:59:136_1nlw_A_1 ModCRE Homology model GGGAGCCGTGTGGTACCT Region 59-136 · 1 3D model Open · Scan
TFS_sp_Q9BW11_MAD3_HUMAN:62:173_7d8t_B_1 ModCRE Homology model TGGTGTGTATTTGTT Region 62-173 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 206 aa
53-173

Region 53-173 5 PWM

Residues
121 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
14 active PDBs · 10 summary rows
Templates
1AM9, 1NKP, 1NLW, 4ATI, 5I50, 7D8T, 8IA3, 8OTS
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
14 active PDB models 10 summary rows
Region 53-17314 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:53:139_1nkp_A_1 1nkp 53-139 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:125_1am9_B_1 1am9 59-125 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:125_1am9_D_1 1am9 59-125 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:136_1nlw_A_1 1nlw 59-136 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:138_5i50_B_1 5i50 59-138 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:158_8ia3_A_1 8ia3 59-158 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:59:158_8ia3_E_1 8ia3 59-158 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:62:122_4ati_B_1 4ati 62-122 View model · PDB
Predicted = Low DIMER_sp_Q9BW11_MAD3_HUMAN:62:173_7d8t_B_1 7d8t 62-173 View model · PDB
Predicted = Low TFS_sp_Q9BW11_MAD3_HUMAN:53:139_1nkp_A_1 1nkp 53-139 View model · PDB
Predicted = Low TFS_sp_Q9BW11_MAD3_HUMAN:59:135_8ots_M_1 8ots 59-135 View model · PDB
Predicted = Low TFS_sp_Q9BW11_MAD3_HUMAN:59:136_1nlw_A_1 1nlw 59-136 View model · PDB
Predicted = Low TFS_sp_Q9BW11_MAD3_HUMAN:59:138_5i50_B_1 5i50 59-138 View model · PDB
Predicted = Low TFS_sp_Q9BW11_MAD3_HUMAN:62:173_7d8t_B_1 7d8t 62-173 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1nlw 53:173 59 136 P:A · DNA:F,G 52.6% / 78.2% 98 View · PDB TFS_sp_Q9BW11_MAD3_HUMAN:59:136_1nlw_A_1
1 5i50 53:173 59,59 138,138 P:A,B · DNA:C,D 31.2% / 57.5% 86,83 View · PDB DIMER_sp_Q9BW11_MAD3_HUMAN:59:138_5i50_B_1
3 5i50 53:173 59,59 138,138 P:A,B · DNA:C,D 31.2% / 57.5% 86,83 View · PDB TFS_sp_Q9BW11_MAD3_HUMAN:59:138_5i50_B_1
2 1nkp 53:173 53 139 P:A · DNA:F,G 31.0% / 58.6% 98 View · PDB TFS_sp_Q9BW11_MAD3_HUMAN:53:139_1nkp_A_1
3 4ati 53:173 62,62 120,122 P:A,B · DNA:C,D 30.6% / 59.7% 96,84 View · PDB DIMER_sp_Q9BW11_MAD3_HUMAN:62:122_4ati_B_1
4 8ots 53:173 59 135 P:M · DNA:I,J 29.9% / 59.7% 97 View · PDB TFS_sp_Q9BW11_MAD3_HUMAN:59:135_8ots_M_1
4 8ia3 53:173 59,59 158,138 P:A,F · DNA:G,H 28.3% / 55.7% 91,76 View · PDB DIMER_sp_Q9BW11_MAD3_HUMAN:59:158_8ia3_A_1
5 8ia3 53:173 59,59 158,138 P:E,F · DNA:G,H 28.3% / 55.7% 89,76 View · PDB DIMER_sp_Q9BW11_MAD3_HUMAN:59:158_8ia3_E_1
2 7d8t 53:173 62,62 173,173 P:A,B · DNA:C,D 24.8% / 55.8% 54,54 View · PDB DIMER_sp_Q9BW11_MAD3_HUMAN:62:173_7d8t_B_1
5 7d8t 53:173 62,62 173,173 P:A,B · DNA:C,D 24.8% / 55.8% 54,54 View · PDB TFS_sp_Q9BW11_MAD3_HUMAN:62:173_7d8t_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-110PF00010Helix-loop-helix DNA-binding domainoverlaps 53-173