ModCRE DB

Transcription factor

Q9BWE0 - REPIN1

DNA-binding protein REPIN1 (60 kDa origin-specific DNA-binding protein) (60 kDa replication initiation region protein) (ATT-binding protein) (DHFR oribeta-binding protein RIP60) (Zinc finger protein 464)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 567 aa

24 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)18
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 54.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 54.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 53.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 53.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 53.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 53.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 52.4% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 51.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.3% identity Open · Scan
M04409_2.00 NN 70-40% CisBP GGCGGCCATTTTGG 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9BWE0_REPI1_HUMAN:401:450_1llm_D_1 ModCRE Homology model GGCGCGCGCGGA Region 401-450 · 1 3D model Open · Scan
TFS_sp_Q9BWE0_REPI1_HUMAN:233:510_5wjq_D_1 ModCRE Homology model ACAACTTTCCTTTGCGTCCCCCGGCCCC Region 233-510 · 1 3D model Open · Scan
TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3j_E_1 ModCRE Homology model GACATCGCCCCGGCCCCCCTCTAGGG Region 263-537 · 1 3D model Open · Scan
TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3m_C_1 ModCRE Homology model CCAAGAAATGACACCCCGGGCCCCCC Region 263-537 · 1 3D model Open · Scan
TFS_sp_Q9BWE0_REPI1_HUMAN:390:537_2i13_A_1 ModCRE Homology model ACTCCTGCGAAACCTCTGCCT Region 390-537 · 1 3D model Open · Scan
TFS_sp_Q9BWE0_REPI1_HUMAN:428:537_5ei9_E_1 ModCRE Homology model GGCCCCCCCACCCCCCG Region 428-537 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 567 aa
233-537

Region 233-537 6 PWM

Residues
305 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 233-5376 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9BWE0_REPI1_HUMAN:401:450_1llm_D_1 1llm 401-450 View model · PDB
Predicted = Low TFS_sp_Q9BWE0_REPI1_HUMAN:233:510_5wjq_D_1 5wjq 233-510 View model · PDB
Predicted = Low TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3j_E_1 5v3j 263-537 View model · PDB
Predicted = Low TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3m_C_1 5v3m 263-537 View model · PDB
Predicted = Low TFS_sp_Q9BWE0_REPI1_HUMAN:390:537_2i13_A_1 2i13 390-537 View model · PDB
Predicted = Low TFS_sp_Q9BWE0_REPI1_HUMAN:428:537_5ei9_E_1 5ei9 428-537 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 232:566 428 537 P:E · DNA:A,B 55.5% / 74.5% 99 View · PDB TFS_sp_Q9BWE0_REPI1_HUMAN:428:537_5ei9_E_1
4 2i13 232:566 390 537 P:A · DNA:C,D 51.4% / 72.3% 96 View · PDB TFS_sp_Q9BWE0_REPI1_HUMAN:390:537_2i13_A_1
1 1llm 232:566 401,401 450,450 P:C,D · DNA:A,B 46.0% / 64.0% 57,58 View · PDB DIMER_sp_Q9BWE0_REPI1_HUMAN:401:450_1llm_D_1
1 5wjq 232:566 233 510 P:D · DNA:A,B 38.4% / 53.0% 98 View · PDB TFS_sp_Q9BWE0_REPI1_HUMAN:233:510_5wjq_D_1
2 5v3m 232:566 263 537 P:C · DNA:A,B 37.2% / 54.2% 98 View · PDB TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3m_C_1
3 5v3j 232:566 263 537 P:E · DNA:A,B 37.2% / 54.2% 98 View · PDB TFS_sp_Q9BWE0_REPI1_HUMAN:263:537_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
86-107PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
116-138PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
177-199PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
236-258PF00096Zinc finger, C2H2 typeoverlaps 233-537
264-286PF00096Zinc finger, C2H2 typeoverlaps 233-537
292-314PF00096Zinc finger, C2H2 typeoverlaps 233-537
375-397PF00096Zinc finger, C2H2 typeoverlaps 233-537
403-425PF00096Zinc finger, C2H2 typeoverlaps 233-537
431-453PF00096Zinc finger, C2H2 typeoverlaps 233-537
459-481PF00096Zinc finger, C2H2 typeoverlaps 233-537
487-509PF00096Zinc finger, C2H2 typeoverlaps 233-537
515-537PF00096Zinc finger, C2H2 typeoverlaps 233-537