ModCRE DB

Transcription factor

Q9BWM5 - ZNF416

Zinc finger protein 416

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 594 aa

1 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M08234_2.00 Known CisBP GTCAACTTGACTGGGCCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 594 aa
257-404

Region 257-404 0 PWM

Residues
148 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 257-4041 model
Actions
Predicted = Low TFS_Q9BWM5:257:404_2i13_A_1 2i13 257-404 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
27-66PF01352KRAB boxNo overlap with loaded model regions
270-292PF00096Zinc finger, C2H2 typeoverlaps 257-404
298-320PF00096Zinc finger, C2H2 typeoverlaps 257-404
326-348PF00096Zinc finger, C2H2 typeoverlaps 257-404
354-376PF00096Zinc finger, C2H2 typeoverlaps 257-404
382-404PF00096Zinc finger, C2H2 typeoverlaps 257-404
410-432PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
438-460PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
466-488PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
494-516PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
522-544PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
550-572PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions