ModCRE DB

Transcription factor

Q9BWX5 - GATA5

Transcription factor GATA-5 (GATA-binding factor 5)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 397 aa

12 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known12
MotifPredictionSourceDNA bindingSupportLogoActions
MA0766.1 Known JASPAR AGATAAGA Direct PWM Open · Scan
MA0766.2 Known JASPAR CAGATAAGGA Direct PWM Open · Scan
MA0766.3 Known JASPAR AGATAAGG Direct PWM Open · Scan
M03065_2.00 Known CisBP AGATAAGA Direct PWM Open · Scan
M04867_2.00 Known CisBP CAGATAAGGG Direct PWM Open · Scan
M04868_2.00 Known CisBP AGATAACGATCT Direct PWM Open · Scan
M04869_2.00 Known CisBP CAGATAAGAA Direct PWM Open · Scan
M04870_2.00 Known CisBP AGATAACGATCT Direct PWM Open · Scan
M04871_2.00 Known CisBP CAGATAAGGA Direct PWM Open · Scan
M04872_2.00 Known CisBP AGATAACGATCT Direct PWM Open · Scan
M04873_2.00 Known CisBP CAGATAAGAA Direct PWM Open · Scan
M04874_2.00 Known CisBP AGATAACGATCT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 397 aa
186-290

Region 186-290 0 PWM

Residues
105 aa
Domains
PF00320 · GATA zinc finger PF00320 · GATA zinc finger
3D models
1 active PDB
Templates
4HC7
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 186-2901 model
Actions
Predicted = Low TFS_Q9BWX5:186:290_4hc7_A_1 4hc7 186-290 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-172PF05349GATA-type transcription activator, N-terminalNo overlap with loaded model regions
189-222PF00320GATA zinc fingeroverlaps 186-290
243-276PF00320GATA zinc fingeroverlaps 186-290