ModCRE DB

Transcription factor

Q9BY29

Kruppel-like zinc finger factor X31

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 415 aa

149 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)143
MotifPredictionSourceDNA bindingSupportLogoActions
M07679_2.00 NN 70-40% CisBP TGCGATCTC 69.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 64.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 63.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 62.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 62.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 61.8% identity Open · Scan
M06050_2.00 NN 70-40% CisBP CACCTGT 61.5% identity Open · Scan
M06053_2.00 NN 70-40% CisBP GAAGCCATAACGGC 61.5% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 61.5% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 61.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 61.4% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 60.7% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 60.7% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 60.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 59.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 59.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 59.2% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 59.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 59.0% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 58.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.8% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 57.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 57.6% identity Open · Scan
MA0735.1 NN 70-40% JASPAR AGACCCCCCACGAAGC 57.6% identity Open · Scan
MA0737.1 NN 70-40% JASPAR GACCCCCCACGAAG 57.6% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 56.9% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 56.8% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 56.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 56.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 56.4% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 56.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.8% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 55.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 55.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 54.9% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 54.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.8% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 54.7% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 54.7% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.3% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 54.1% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 54.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.0% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 54.0% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 53.8% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 53.8% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 53.8% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 53.8% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 53.8% identity Open · Scan
M08889_2.00 NN 70-40% CisBP GCTGCTCTTTTT 53.8% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 53.8% identity Open · Scan
MA1491.1 NN 70-40% JASPAR AGACCACCCACGTCG 53.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 53.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 53.5% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 53.5% identity Open · Scan
MA0088.2 NN 70-40% JASPAR TACCCACAATGCATTG 53.5% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 53.4% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 53.3% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.1% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 53.1% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.1% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 52.9% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 52.9% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 52.6% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.5% identity Open · Scan
M01444_2.00 NN 70-40% CisBP CACTGCCAC 52.3% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 52.0% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.9% identity Open · Scan
M01445_2.00 NN 70-40% CisBP ACACGCCGT 51.8% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 51.8% identity Open · Scan
MA0863.1 NN 70-40% JASPAR TTTGCACACGGCAC 51.8% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 51.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.7% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 51.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.2% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 51.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.2% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 51.2% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 51.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 50.9% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 50.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.8% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.7% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 50.7% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.7% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.4% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.2% identity Open · Scan
M00132_2.00 NN 70-40% CisBP TGCTACCGTT 50.0% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.0% identity Open · Scan
M02643_2.00 NN 70-40% CisBP GACCACCCACG 50.0% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 50.0% identity Open · Scan
M08246_2.00 NN 70-40% CisBP GCCCCACCCA 50.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.0% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 50.0% identity Open · Scan
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 50.0% identity Open · Scan
MA1511.1 NN 70-40% JASPAR GCCACACCCCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q9BY29_Q9BY29_HUMAN:22:73_1llm_D_1 ModCRE Homology model TTCGGGCCCATA Region 22-73 · 1 3D model Open · Scan
TFS_tr_Q9BY29_Q9BY29_HUMAN:108:406_7w1m_H_1 ModCRE Homology model ATCGGGCCCCCCTGTGTTACAGGGCCCCCTTGTGGGTTATCCA Region 108-406 · 1 3D model Open · Scan
TFS_tr_Q9BY29_Q9BY29_HUMAN:145:298_2i13_A_1 ModCRE Homology model CTCAAAAGGGTGGCCGCACTT Region 145-298 · 1 3D model Open · Scan
TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3j_E_1 ModCRE Homology model CCCCCTGACGCGGGGATAACCGGGGG Region 23-299 · 1 3D model Open · Scan
TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3m_C_1 ModCRE Homology model CGGCCGGGCACCGGGAGGGGGGTCGC Region 23-299 · 1 3D model Open · Scan
TFS_tr_Q9BY29_Q9BY29_HUMAN:49:327_5wjq_D_1 ModCRE Homology model GGGGGGGGGCAAATGAAGGGCCGGACGG Region 49-327 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 415 aa
22-406

Region 22-406 6 PWM

Residues
385 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 22-4066 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q9BY29_Q9BY29_HUMAN:22:73_1llm_D_1 1llm 22-73 View model · PDB
Predicted = Low TFS_tr_Q9BY29_Q9BY29_HUMAN:108:406_7w1m_H_1 7w1m 108-406 View model · PDB
Predicted = Low TFS_tr_Q9BY29_Q9BY29_HUMAN:145:298_2i13_A_1 2i13 145-298 View model · PDB
Predicted = Low TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3j_E_1 5v3j 23-299 View model · PDB
Predicted = Low TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3m_C_1 5v3m 23-299 View model · PDB
Predicted = Low TFS_tr_Q9BY29_Q9BY29_HUMAN:49:327_5wjq_D_1 5wjq 49-327 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 18:406 145 298 P:A · DNA:C,D 56.5% / 66.9% 100 View · PDB TFS_tr_Q9BY29_Q9BY29_HUMAN:145:298_2i13_A_1
1 5wjq 18:406 49 327 P:D · DNA:A,B 54.1% / 72.0% 99 View · PDB TFS_tr_Q9BY29_Q9BY29_HUMAN:49:327_5wjq_D_1
2 5v3m 18:406 23 299 P:C · DNA:A,B 53.4% / 70.8% 100 View · PDB TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3m_C_1
3 5v3j 18:406 23 299 P:E · DNA:A,B 53.4% / 70.8% 100 View · PDB TFS_tr_Q9BY29_Q9BY29_HUMAN:23:299_5v3j_E_1
1 1llm 18:406 22,22 73,73 P:C,D · DNA:A,B 44.2% / 63.5% 59,61 View · PDB DIMER_tr_Q9BY29_Q9BY29_HUMAN:22:73_1llm_D_1
5 7w1m 18:406 108 406 P:H · DNA:F,G 34.4% / 52.3% 92 View · PDB TFS_tr_Q9BY29_Q9BY29_HUMAN:108:406_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-46PF00096Zinc finger, C2H2 typeoverlaps 22-406
52-74PF00096Zinc finger, C2H2 typeoverlaps 22-406
108-130PF00096Zinc finger, C2H2 typeoverlaps 22-406
136-158PF00096Zinc finger, C2H2 typeoverlaps 22-406
164-186PF00096Zinc finger, C2H2 typeoverlaps 22-406
192-214PF00096Zinc finger, C2H2 typeoverlaps 22-406
220-242PF00096Zinc finger, C2H2 typeoverlaps 22-406
248-270PF00096Zinc finger, C2H2 typeoverlaps 22-406
276-298PF00096Zinc finger, C2H2 typeoverlaps 22-406
304-326PF00096Zinc finger, C2H2 typeoverlaps 22-406
332-354PF00096Zinc finger, C2H2 typeoverlaps 22-406
360-382PF00096Zinc finger, C2H2 typeoverlaps 22-406
388-410PF00096Zinc finger, C2H2 typeoverlaps 22-406