Region 209-282 0 PWM
- Residues
- 74 aa
- Domains
- PF03792 · PBC domain PF05920 · Homeobox KN domain
- 3D models
- 1 active PDB
- Templates
- 5ZJR
- Sources
- Structure model
Transcription factor
Q9BYU1 - PBX4
Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 374 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M00276_2.00 | Known | CisBP | ACTAATTAATT | Direct PWM | Open · Scan | |
| M00277_2.00 | Known | CisBP | TTTGACGTGT | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
374 aa
209-282
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 209-2821 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_Q9BYU1:209:282_5zjr_B_1 | 5zjr | 209-282 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 18-209 | PF03792 | PBC domain | overlaps 209-282 |
| 229-267 | PF05920 | Homeobox KN domain | overlaps 209-282 |