ModCRE DB

Transcription factor

Q9BZI1 - IRX2

Iroquois-class homeodomain protein IRX-2 (Homeodomain protein IRXA2) (Iroquois homeobox protein 2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 471 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M03212_2.00 Known CisBP TTACATGACATG Direct PWM Open · Scan
Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M06519_2.00 NN 70+% CisBP TAACA 77.5% identity Open · Scan
M00416_2.00 NN 70+% CisBP AATTACAA 73.2% identity Open · Scan
M00456_2.00 NN 70+% CisBP ATTACAA 71.5% identity Open · Scan
Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M02229_2.00 NN 70-40% CisBP AGTACATGTTT 67.9% identity Open · Scan
M02064_2.00 NN 70-40% CisBP ATTACAAG 61.5% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 60.6% identity Open · Scan
M02032_2.00 NN 70-40% CisBP TGACATGTCA 59.6% identity Open · Scan
MA1118.1 NN 70-40% JASPAR GTAACCTGATA 57.5% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 55.5% identity Open · Scan
M00461_2.00 NN 70-40% CisBP ATGATACCC 52.7% identity Open · Scan
M04940_2.00 NN 70-40% CisBP CCGTATCATT 52.7% identity Open · Scan
M06342_2.00 NN 70-40% CisBP TTTTAACA 51.9% identity Open · Scan
M05316_2.00 NN 70-40% CisBP ACGCGTACAACGCGT 51.8% identity Open · Scan
M02161_2.00 NN 70-40% CisBP TGACATGT 50.0% identity Open · Scan
M02168_2.00 NN 70-40% CisBP TTGACATGT 50.0% identity Open · Scan
M06490_2.00 NN 70-40% CisBP TGACAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 471 aa
118-172

Region 118-172 0 PWM

Residues
55 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 118-1721 model
Actions
Predicted = Low DIMER_Q9BZI1:118:172_6fqp_B_1 6fqp 118-172 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
132-171PF05920Homeobox KN domainoverlaps 118-172