ModCRE DB

Transcription factor

Q9H6I2 - SOX17

Transcription factor SOX-17

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 414 aa

36 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
M05896_2.00 Known CisBP AAACAATGGA Direct PWM Open · Scan
M09396_2.00 Known CisBP GCCATTGTTTT Direct PWM Open · Scan
SOX17_HUMAN.H11MO.0.C Known HOCOMOCO GCCATTGTTTT Direct PWM Open · Scan
Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0078.1 NN 70+% JASPAR CTCATTGTC 83.8% identity Open · Scan
M03533_2.00 NN 70+% CisBP AACAATTGCATTGTT 82.1% identity Open · Scan
M03974_2.00 NN 70+% CisBP AACAATAACATTGTT 72.8% identity Open · Scan
Nearest Neighbor (70% - 40%)30
MotifPredictionSourceDNA bindingSupportLogoActions
MA0077.1 NN 70-40% JASPAR CCATTGTTC 67.8% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 66.6% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 65.5% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 64.2% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 64.2% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 64.0% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 62.6% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 61.8% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 61.8% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 61.5% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 61.3% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 61.3% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 61.3% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 61.3% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 60.5% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 59.2% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 58.9% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 57.5% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 57.3% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 56.7% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 56.7% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 56.7% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 55.5% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 55.5% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 53.9% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 53.8% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 52.9% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 52.9% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 52.9% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 414 aa
65-145

Region 65-145 0 PWM

Residues
81 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 65-1451 model
Actions
Predicted = Low TFS_Q9H6I2:65:145_1j46_A_1 1j46 65-145 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
69-136PF00505HMG (high mobility group) boxoverlaps 65-145
203-253PF12067Sox 17/18 central domainNo overlap with loaded model regions