ModCRE DB

Transcription factor

Q9H707 - ZNF552

Zinc finger protein 552

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 407 aa

43 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07655_2.00 Known CisBP GCCCCTCGTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 68.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 58.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 56.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 52.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.7% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 51.1% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 50.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.8% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9H707_ZN552_HUMAN:294:345_1llm_D_1 ModCRE Homology model TCCGCCGGCGGG Region 294-345 · 1 3D model Open · Scan
TFS_sp_Q9H707_ZN552_HUMAN:105:248_2i13_A_1 ModCRE Homology model CTTTGGGGGCCCCGGGGGGGA Region 105-248 · 1 3D model Open · Scan
TFS_sp_Q9H707_ZN552_HUMAN:75:248_5wjq_D_1 ModCRE Homology model CTTGGGGGGCCCCGAGGGTGAAAAAACA Region 75-248 · 1 3D model Open · Scan
TFS_sp_Q9H707_ZN552_HUMAN:88:192_5egb_A_1 ModCRE Homology model TTTCGGGAGGGGGGACAA Region 88-192 · 1 3D model Open · Scan
TFS_sp_Q9H707_ZN552_HUMAN:88:192_5ei9_E_1 ModCRE Homology model GGGGGCCATGGGAGAGA Region 88-192 · 1 3D model Open · Scan
TFS_sp_Q9H707_ZN552_HUMAN:93:192_5eh2_F_1 ModCRE Homology model GGGCCCCAGGGGAGAACAA Region 93-192 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 407 aa
75-402

Region 75-402 6 PWM

Residues
328 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 75-40211 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9H707_ZN552_HUMAN:294:345_1llm_D_1 1llm 294-345 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:105:248_2i13_A_1 2i13 105-248 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:204:402_5wjq_D_1 5wjq 204-402 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:212:402_5v3j_E_1 5v3j 212-402 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:212:402_5v3m_C_1 5v3m 212-402 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:250:402_2i13_A_1 2i13 250-402 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:265:375_5ei9_E_1 5ei9 265-375 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:75:248_5wjq_D_1 5wjq 75-248 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:88:192_5egb_A_1 5egb 88-192 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:88:192_5ei9_E_1 5ei9 88-192 View model · PDB
Predicted = Low TFS_sp_Q9H707_ZN552_HUMAN:93:192_5eh2_F_1 5eh2 93-192 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 204:405 265 375 P:E · DNA:A,B 56.8% / 69.4% 100 View · PDB TFS_sp_Q9H707_ZN552_HUMAN:265:375_5ei9_E_1
4 2i13 204:405 250 402 P:A · DNA:C,D 53.6% / 65.4% 99 View · PDB TFS_sp_Q9H707_ZN552_HUMAN:250:402_2i13_A_1
1 5v3m 204:405 212 402 P:C · DNA:A,B 47.6% / 59.2% 68 View · PDB TFS_sp_Q9H707_ZN552_HUMAN:212:402_5v3m_C_1
2 5v3j 204:405 212 402 P:E · DNA:A,B 47.6% / 59.2% 68 View · PDB TFS_sp_Q9H707_ZN552_HUMAN:212:402_5v3j_E_1
3 5wjq 204:405 204 402 P:D · DNA:A,B 45.7% / 58.8% 70 View · PDB TFS_sp_Q9H707_ZN552_HUMAN:204:402_5wjq_D_1
1 1llm 204:405 294,294 345,345 P:C,D · DNA:A,B 38.5% / 57.7% 59,61 View · PDB DIMER_sp_Q9H707_ZN552_HUMAN:294:345_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
268-290PF00096Zinc finger, C2H2 typeoverlaps 75-402
296-318PF00096Zinc finger, C2H2 typeoverlaps 75-402
324-346PF00096Zinc finger, C2H2 typeoverlaps 75-402
352-374PF00096Zinc finger, C2H2 typeoverlaps 75-402
382-402PF00096Zinc finger, C2H2 typeoverlaps 75-402