ModCRE DB

Transcription factor

Q9H861

cDNA FLJ13927 fis, clone Y79AA1000627, moderately similar to Homo sapiens zinc finger protein (ZF5128) mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 330 aa

87 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07566_2.00 NN 70+% CisBP TCAAACCATCCTTGC 99.3% identity Open · Scan
Nearest Neighbor (70% - 40%)86
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 58.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 57.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 57.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 57.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 56.9% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 56.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 56.4% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 55.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 54.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.2% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 54.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 54.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.1% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 54.0% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 54.0% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 53.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.4% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 53.3% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 53.3% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 53.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.1% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 52.9% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 52.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 52.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.7% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 52.6% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.5% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 51.9% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 51.7% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 51.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 51.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.1% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 51.1% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 51.1% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 50.9% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.9% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.8% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 50.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.6% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.6% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.6% identity Open · Scan
MA0162.1 NN 70-40% JASPAR TGCGTGGGCGG 50.6% identity Open · Scan
MA0162.2 NN 70-40% JASPAR CCCCCGCCCCCGCC 50.6% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 50.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 50.5% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.4% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.0% identity Open · Scan
M08246_2.00 NN 70-40% CisBP GCCCCACCCA 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
MA1511.1 NN 70-40% JASPAR GCCACACCCCC 50.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 330 aa
145-253

Region 145-253 0 PWM

Residues
109 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EH2
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 145-2531 model
Actions
Predicted = Low TFS_Q9H861:145:253_5eh2_F_1 5eh2 145-253 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-56PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
62-84PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
90-112PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
118-140PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
146-168PF00096Zinc finger, C2H2 typeoverlaps 145-253
174-196PF00096Zinc finger, C2H2 typeoverlaps 145-253
202-224PF00096Zinc finger, C2H2 typeoverlaps 145-253
230-252PF00096Zinc finger, C2H2 typeoverlaps 145-253
258-280PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions