Region 503-542 2 PWM
- Residues
- 40 aa
- Domains
- No overlapping PFAM annotation recorded
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 6W8V, 6W8W
- Sources
- Predicted = Low
Transcription factor
Q9H8Y1 - VRTN
Vertnin
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 702 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q9H8Y1_VRTN_HUMAN:503:542_6w8v_A_1 | ModCRE | Homology model | GGCCAC | Region 503-542 · 1 3D model | Open · Scan | |
| TFS_sp_Q9H8Y1_VRTN_HUMAN:503:542_6w8w_A_1 | ModCRE | Homology model | CGACA | Region 503-542 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
702 aa
503-542
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 503-5422 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q9H8Y1_VRTN_HUMAN:503:542_6w8v_A_1 | 6w8v | 503-542 | View model · PDB |
| Predicted = Low | TFS_sp_Q9H8Y1_VRTN_HUMAN:503:542_6w8w_A_1 | 6w8w | 503-542 | View model · PDB |
Model-summary evidence imported for this region.
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 76-223 | PF29258 | Vertnin, OTU domain | No overlap with loaded model regions |
| 316-354 | PF28388 | Vertnin middle domain | No overlap with loaded model regions |
| 401-448 | PF28388 | Vertnin middle domain | No overlap with loaded model regions |