ModCRE DB

Transcription factor

Q9H942

cDNA FLJ13032 fis, clone NT2RP3001120, moderately similar to ZINC FINGER PROTEIN 136

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 536 aa

52 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)48
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.2% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 65.5% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 61.2% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 59.3% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 58.5% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 58.4% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 58.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.3% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 55.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 55.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.1% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 55.0% identity Open · Scan
M00022_2.00 NN 70-40% CisBP GGCGCCACAG 54.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 54.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 53.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 52.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 52.8% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.5% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 52.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.2% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 52.1% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 52.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 51.9% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.9% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 50.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.7% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 50.7% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 50.7% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.7% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 50.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.2% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3j_E_1 ModCRE Homology model TGGGGGGGCTCCGGCTCCCCCGGGCC Region 198-474 · 1 3D model Open · Scan
TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3m_C_1 ModCRE Homology model GGAACCGGCCACGCCCCCCCCCCGCC Region 198-474 · 1 3D model Open · Scan
TFS_tr_Q9H942_Q9H942_HUMAN:225:501_5wjq_D_1 ModCRE Homology model TTAAACCCCCCCGCGTCCCCCGAGCACC Region 225-501 · 1 3D model Open · Scan
TFS_tr_Q9H942_Q9H942_HUMAN:320:473_2i13_A_1 ModCRE Homology model ACACTAAGCCTACTAGCTGAG Region 320-473 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 536 aa
198-501

Region 198-501 4 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 198-5016 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q9H942_Q9H942_HUMAN:309:357_1llm_D_1 1llm 309-357 View model · PDB
Predicted = Low TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3j_E_1 5v3j 198-474 View model · PDB
Predicted = Low TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3m_C_1 5v3m 198-474 View model · PDB
Predicted = Low TFS_tr_Q9H942_Q9H942_HUMAN:199:488_7w1m_H_1 7w1m 199-488 View model · PDB
Predicted = Low TFS_tr_Q9H942_Q9H942_HUMAN:225:501_5wjq_D_1 5wjq 225-501 View model · PDB
Predicted = Low TFS_tr_Q9H942_Q9H942_HUMAN:320:473_2i13_A_1 2i13 320-473 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 195:521 320 473 P:A · DNA:C,D 52.6% / 70.1% 100 View · PDB TFS_tr_Q9H942_Q9H942_HUMAN:320:473_2i13_A_1
1 5wjq 195:521 225 501 P:D · DNA:A,B 52.5% / 69.1% 98 View · PDB TFS_tr_Q9H942_Q9H942_HUMAN:225:501_5wjq_D_1
2 5v3m 195:521 198 474 P:C · DNA:A,B 51.3% / 68.2% 100 View · PDB TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3m_C_1
3 5v3j 195:521 198 474 P:E · DNA:A,B 51.3% / 68.2% 100 View · PDB TFS_tr_Q9H942_Q9H942_HUMAN:198:474_5v3j_E_1
1 1llm 195:521 309,309 357,357 P:C,D · DNA:A,B 44.9% / 63.3% 56,57 View · PDB DIMER_tr_Q9H942_Q9H942_HUMAN:309:357_1llm_D_1
5 7w1m 195:521 199 488 P:H · DNA:F,G 35.1% / 50.5% 90 View · PDB TFS_tr_Q9H942_Q9H942_HUMAN:199:488_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-47PF01352KRAB boxNo overlap with loaded model regions
227-249PF00096Zinc finger, C2H2 typeoverlaps 198-501
256-277PF00096Zinc finger, C2H2 typeoverlaps 198-501
283-305PF00096Zinc finger, C2H2 typeoverlaps 198-501
311-333PF00096Zinc finger, C2H2 typeoverlaps 198-501
339-361PF13894C2H2-type zinc fingeroverlaps 198-501
395-417PF13912C2H2-type zinc fingeroverlaps 198-501
424-445PF00096Zinc finger, C2H2 typeoverlaps 198-501