ModCRE DB

Transcription factor

Q9H9D4 - ZNF408

Zinc finger protein 408 (PR domain zinc finger protein 17)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 720 aa

12 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)5
MotifPredictionSourceDNA bindingSupportLogoActions
M06102_2.00 NN 70-40% CisBP GCTCAATAA 52.9% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 50.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 50.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 50.0% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3j_E_1 ModCRE Homology model GCCTGCAACTCGGGGGCCCGCGGGGG Region 353-629 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3m_C_1 ModCRE Homology model TGCCCCCCGCGCCGTACCCCCTGACC Region 353-629 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5wjq_D_1 ModCRE Homology model ACCCCCCCCATCTTCTACCCCCCCCGGG Region 353-629 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:433:577_6ml7_A_1 ModCRE Homology model CCCCCTAGGCCATTCAAAA Region 433-577 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:446:601_2i13_A_1 ModCRE Homology model AACGTTAGCCTACTACTTAAA Region 446-601 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:493:601_5egb_A_1 ModCRE Homology model CCGGGGGCGCGGGGTGTT Region 493-601 · 1 3D model Open · Scan
TFS_sp_Q9H9D4_ZN408_HUMAN:493:601_5ei9_E_1 ModCRE Homology model CGGCAGGGGGGGGGGCG Region 493-601 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 720 aa
353-629

Region 353-629 7 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
8 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EI9, 5V3J, 5V3M, 5WJQ, 6ML7
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 6 summary rows
Region 353-6298 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9H9D4_ZN408_HUMAN:494:542_1llm_D_1 1llm 494-542 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3j_E_1 5v3j 353-629 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3m_C_1 5v3m 353-629 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5wjq_D_1 5wjq 353-629 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:433:577_6ml7_A_1 6ml7 433-577 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:446:601_2i13_A_1 2i13 446-601 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:493:601_5egb_A_1 5egb 493-601 View model · PDB
Predicted = Low TFS_sp_Q9H9D4_ZN408_HUMAN:493:601_5ei9_E_1 5ei9 493-601 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 351:633 446 601 P:A · DNA:C,D 44.6% / 61.1% 99 View · PDB TFS_sp_Q9H9D4_ZN408_HUMAN:446:601_2i13_A_1
1 1llm 351:633 494,494 542,542 P:C,D · DNA:A,B 42.9% / 57.1% 56,57 View · PDB DIMER_sp_Q9H9D4_ZN408_HUMAN:494:542_1llm_D_1
5 6ml7 351:633 433 577 P:A · DNA:E,F 39.7% / 56.2% 99 View · PDB TFS_sp_Q9H9D4_ZN408_HUMAN:433:577_6ml7_A_1
1 5wjq 351:633 353 629 P:D · DNA:A,B 38.5% / 51.1% 97 View · PDB TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5wjq_D_1
2 5v3m 351:633 353 629 P:C · DNA:A,B 37.4% / 51.1% 98 View · PDB TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3m_C_1
3 5v3j 351:633 353 629 P:E · DNA:A,B 37.4% / 51.1% 98 View · PDB TFS_sp_Q9H9D4_ZN408_HUMAN:353:629_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
65-173PF21549PR domain zinc finger protein 2, PR domainNo overlap with loaded model regions
381-403PF00096Zinc finger, C2H2 typeoverlaps 353-629
409-431PF00096Zinc finger, C2H2 typeoverlaps 353-629
437-459PF00096Zinc finger, C2H2 typeoverlaps 353-629
469-490PF00096Zinc finger, C2H2 typeoverlaps 353-629
496-518PF00096Zinc finger, C2H2 typeoverlaps 353-629
553-573PF00096Zinc finger, C2H2 typeoverlaps 353-629
579-601PF00096Zinc finger, C2H2 typeoverlaps 353-629
607-629PF00096Zinc finger, C2H2 typeoverlaps 353-629