ModCRE DB

Transcription factor

Q9H9S0 - NANOG

Homeobox protein NANOG (Homeobox transcription factor Nanog) (hNanog)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 305 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
M09139_2.00 Known CisBP ATTTGCATAACAAAGGA Direct PWM Open · Scan
M05015_2.00 Known CisBP TTAATGGC Direct PWM Open · Scan
M05016_2.00 Known CisBP TTAACGA Direct PWM Open · Scan
M05017_2.00 Known CisBP TTAATTGC Direct PWM Open · Scan
NANOG_HUMAN.H11MO.0.A Known HOCOMOCO TCCTTTGTTATGCAAAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 305 aa
95-151

Region 95-151 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 95-1511 model
Actions
Predicted = Low DIMER_Q9H9S0:95:151_3rkq_A_1 3rkq 95-151 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
97-152PF00046Homeodomainoverlaps 95-151