ModCRE DB

Transcription factor

Q9HAH1 - ZNF556

Zinc finger protein 556

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 456 aa

31 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)22
MotifPredictionSourceDNA bindingSupportLogoActions
M00958_2.00 NN 70-40% CisBP CGGCATCCC 59.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 54.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 51.6% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.5% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.4% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 51.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 50.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9HAH1_ZN556_HUMAN:143:405_5wjq_D_1 ModCRE Homology model CCCCCCCCCCGCGGGGGCACGGGGCCGG Region 143-405 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5egb_A_1 ModCRE Homology model CGGGGCCCGGGGACGGGA Region 147-253 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5eh2_F_1 ModCRE Homology model GGGGGGGGGGGCTGGCGGG Region 147-253 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5ei9_E_1 ModCRE Homology model CGGGCGGGCGGGGGGCG Region 147-253 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3j_E_1 ModCRE Homology model TCCCCCCGGTGGGTAGCCCACTTC Region 147-408 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3m_C_1 ModCRE Homology model CCACCCCCTCGGGGGGGCCCCCTTA Region 147-408 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:152:225_1a1g_A_1 ModCRE Homology model GCCCCCCCCT Region 152-225 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:171:313_6ml7_A_1 ModCRE Homology model AAGCTAGGGTGAGTAGCCG Region 171-313 · 1 3D model Open · Scan
TFS_sp_Q9HAH1_ZN556_HUMAN:184:337_2i13_A_1 ModCRE Homology model ACTCAGCTACTTCTCCTTCAT Region 184-337 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 456 aa
143-408

Region 143-408 9 PWM

Residues
266 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1A1G, 1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 143-40810 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9HAH1_ZN556_HUMAN:173:221_1llm_D_1 1llm 173-221 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:143:405_5wjq_D_1 5wjq 143-405 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5egb_A_1 5egb 147-253 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5eh2_F_1 5eh2 147-253 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:147:253_5ei9_E_1 5ei9 147-253 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3j_E_1 5v3j 147-408 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3m_C_1 5v3m 147-408 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:152:225_1a1g_A_1 1a1g 152-225 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:171:313_6ml7_A_1 6ml7 171-313 View model · PDB
Predicted = Low TFS_sp_Q9HAH1_ZN556_HUMAN:184:337_2i13_A_1 2i13 184-337 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 143:408 184 337 P:A · DNA:C,D 48.1% / 60.4% 100 View · PDB TFS_sp_Q9HAH1_ZN556_HUMAN:184:337_2i13_A_1
1 1llm 143:408 173,173 221,221 P:C,D · DNA:A,B 46.9% / 65.3% 56,57 View · PDB DIMER_sp_Q9HAH1_ZN556_HUMAN:173:221_1llm_D_1
1 5wjq 143:408 143 405 P:D · DNA:A,B 41.3% / 58.3% 93 View · PDB TFS_sp_Q9HAH1_ZN556_HUMAN:143:405_5wjq_D_1
2 5v3m 143:408 147 408 P:C · DNA:A,B 41.1% / 55.9% 94 View · PDB TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3m_C_1
3 5v3j 143:408 147 408 P:E · DNA:A,B 41.1% / 55.9% 94 View · PDB TFS_sp_Q9HAH1_ZN556_HUMAN:147:408_5v3j_E_1
5 6ml7 143:408 171 313 P:A · DNA:E,F 38.5% / 58.0% 100 View · PDB TFS_sp_Q9HAH1_ZN556_HUMAN:171:313_6ml7_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
147-169PF00096Zinc finger, C2H2 typeoverlaps 143-408
175-197PF00096Zinc finger, C2H2 typeoverlaps 143-408
203-225PF00096Zinc finger, C2H2 typeoverlaps 143-408
231-253PF13894C2H2-type zinc fingeroverlaps 143-408
259-281PF00096Zinc finger, C2H2 typeoverlaps 143-408
287-309PF00096Zinc finger, C2H2 typeoverlaps 143-408
315-337PF00096Zinc finger, C2H2 typeoverlaps 143-408