ModCRE DB

Transcription factor

Q9HB31 - SEBOX

Homeobox protein SEBOX (Homeobox OG-9) (Skin-, embryo-, brain- and oocyte-specific homeobox)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 190 aa

60 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)46
MotifPredictionSourceDNA bindingSupportLogoActions
M02097_2.00 NN 70-40% CisBP AATTAATTAG 62.6% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 58.1% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 58.1% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 58.1% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 57.4% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 57.4% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 57.4% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 57.4% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 57.4% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 56.6% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 56.4% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 56.4% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 55.7% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 55.7% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 55.7% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 54.8% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 54.8% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 54.3% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 53.1% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 52.9% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 52.6% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 51.8% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 51.8% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 51.8% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 51.8% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 51.8% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 51.8% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 51.8% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 51.8% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 51.8% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 51.8% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 51.8% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 51.6% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 51.6% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 51.6% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 51.6% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 51.6% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 51.4% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 50.9% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 50.8% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 50.7% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 50.7% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 50.7% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 50.0% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 50.0% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 50.0% identity Open · Scan
ModCRE14
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9HB31_SEBOX_HUMAN:20:70_3rkq_B_1 ModCRE Homology model CAGAGGCTTTCAGACTTTG Region 20-70 · 1 3D model Open · Scan
DIMER_sp_Q9HB31_SEBOX_HUMAN:20:73_3a01_B_1 ModCRE Homology model GGGTAATTCATCAGGGG Region 20-73 · 1 3D model Open · Scan
DIMER_sp_Q9HB31_SEBOX_HUMAN:20:73_6a8r_B_1 ModCRE Homology model CAATGGCCCA Region 20-73 · 1 3D model Open · Scan
DIMER_sp_Q9HB31_SEBOX_HUMAN:20:80_1fjl_A_1 ModCRE Homology model TTGATGCCATCAA Region 20-80 · 1 3D model Open · Scan
DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_5z2t_D_1 ModCRE Homology model ATGATTTCATTCA Region 23-73 · 1 3D model Open · Scan
DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_6dfy_C_1 ModCRE Homology model AATGCGATTCC Region 23-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:17:73_2lkx_A_1 ModCRE Homology model CCATTGATGGCCA Region 17-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_3cmy_A_1 ModCRE Homology model ATTATTA Region 20-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_6a8r_B_1 ModCRE Homology model CAATGGCCCA Region 20-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:20:74_1fjl_B_1 ModCRE Homology model TTGCTGTCATCAA Region 20-74 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:21:73_3lnq_A_1 ModCRE Homology model GCTATTAATGGCCC Region 21-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:21:76_3hdd_B_1 ModCRE Homology model GCGGCAAAATTGCGCAA Region 21-76 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:23:73_5z2t_D_1 ModCRE Homology model TTGATTTAATTCA Region 23-73 · 1 3D model Open · Scan
TFS_sp_Q9HB31_SEBOX_HUMAN:23:73_6dfy_C_1 ModCRE Homology model AATGCCATTCC Region 23-73 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 190 aa
17-80

Region 17-80 14 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
16 active PDBs · 10 summary rows
Templates
1FJL, 2LKX, 3A01, 3CMY, 3HDD, 3LNQ, 3RKQ, 5Z2T, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 10 summary rows
Region 17-8016 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:20:70_3rkq_B_1 3rkq 20-70 View model · PDB
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:20:73_3a01_B_1 3a01 20-73 View model · PDB
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:20:73_6a8r_B_1 6a8r 20-73 View model · PDB
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:20:80_1fjl_A_1 1fjl 20-80 View model · PDB
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_5z2t_D_1 5z2t 23-73 View model · PDB
Predicted = Low DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_6dfy_C_1 6dfy 23-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:17:73_2lkx_A_1 2lkx 17-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_3a01_B_1 3a01 20-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_3cmy_A_1 3cmy 20-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_6a8r_B_1 6a8r 20-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:20:74_1fjl_B_1 1fjl 20-74 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:20:80_1fjl_A_1 1fjl 20-80 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:21:73_3lnq_A_1 3lnq 21-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:21:76_3hdd_B_1 3hdd 21-76 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:23:73_5z2t_D_1 5z2t 23-73 View model · PDB
Predicted = Low TFS_sp_Q9HB31_SEBOX_HUMAN:23:73_6dfy_C_1 6dfy 23-73 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1fjl 12:80 20,20 80,74 P:A,B · DNA:D,E 57.4% / 65.6% 93,96 View · PIR DIMER_sp_Q9HB31_SEBOX_HUMAN:20:80_1fjl_A_1
1 1fjl 12:80 20,20 80,74 P:A,B · DNA:D,E 57.4% / 65.6% 93,96 View · PDB TFS_sp_Q9HB31_SEBOX_HUMAN:20:80_1fjl_A_1
4 3cmy 12:80 20 73 P:A · DNA:B,C 57.4% / 64.8% 90 View · PDB TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_3cmy_A_1
2 3a01 12:80 20,20 73,73 P:A,B · DNA:C,D 55.6% / 68.5% 69,94 View · PDB DIMER_sp_Q9HB31_SEBOX_HUMAN:20:73_3a01_B_1
2 3a01 12:80 20,20 73,73 P:A,B · DNA:C,D 55.6% / 68.5% 69,94 View · PDB TFS_sp_Q9HB31_SEBOX_HUMAN:20:73_3a01_B_1
3 3lnq 12:80 21 73 P:A · DNA:B,C 54.7% / 67.9% 91 View · PDB TFS_sp_Q9HB31_SEBOX_HUMAN:21:73_3lnq_A_1
5 2lkx 12:80 17 73 P:A · DNA:B,C 52.6% / 66.7% 83 View · PDB TFS_sp_Q9HB31_SEBOX_HUMAN:17:73_2lkx_A_1
3 6dfy 12:80 23,24 73,73 P:C,D · DNA:E,F 43.1% / 58.8% 94,96 View · PDB DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_6dfy_C_1
4 5z2t 12:80 23,23 73,73 P:C,D · DNA:E,F 43.1% / 58.8% 96,94 View · PIR DIMER_sp_Q9HB31_SEBOX_HUMAN:23:73_5z2t_D_1
5 3rkq 12:80 20,20 70,70 P:A,B · DNA:C,D 39.2% / 54.9% 87,89 View · PDB DIMER_sp_Q9HB31_SEBOX_HUMAN:20:70_3rkq_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
20-73PF00046Homeodomainoverlaps 17-80