ModCRE DB

Transcription factor

Q9HBE1 - PATZ1

POZ-, AT hook-, and zinc finger-containing protein 1 (BTB/POZ domain zinc finger transcription factor) (Protein kinase A RI subunit alpha-associated protein) (Zinc finger and BTB domain-containing protein 19) (Zinc finger protein 278) (Zinc finger sarcoma gene protein)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 687 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M08864_2.00 Known CisBP CCTCCCCCCCCGCCCCCTCCCC Direct PWM Open · Scan
MA1961.1 Known JASPAR GGGGGGCGGGGG Direct PWM Open · Scan
MA1961.2 Known JASPAR GGGGGCGGGGG Direct PWM Open · Scan
M08287_2.00 Known CisBP CCCCTCCC Direct PWM Open · Scan
M10137_2.00 Known CisBP TGGCCCCCCCCCC Direct PWM Open · Scan
PATZ1_HUMAN.H11MO.0.C Known HOCOMOCO GGGGAGGGGGCGGGGGGGGAGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 687 aa
353-464

Region 353-464 0 PWM

Residues
112 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
1 active PDB
Templates
5EGB
Sources
Structure model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 353-4641 model
Actions
Predicted = Low TFS_Q9HBE1:353:464_5egb_A_1 5egb 353-464 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
30-159PF00651BTB/POZ domainNo overlap with loaded model regions
357-377PF00096Zinc finger, C2H2 typeoverlaps 353-464
383-405PF00096Zinc finger, C2H2 typeoverlaps 353-464
413-436PF00096Zinc finger, C2H2 typeoverlaps 353-464
442-466PF13912C2H2-type zinc fingeroverlaps 353-464
497-517PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
535-604PF16637Putative zinc-finger between two C2H2 zinc-fingers on PatzNo overlap with loaded model regions
605-628PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions