ModCRE DB

Transcription factor

Q9NP08 - HMX1

Homeobox protein HMX1 (Homeobox protein H6)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 348 aa

94 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
M03243_2.00 Known CisBP TTTTAATTGCT Direct PWM Open · Scan
M05393_2.00 Known CisBP GTTAAGTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
M06554_2.00 NN 70+% CisBP TTAATTG 86.5% identity Open · Scan
MA0896.1 NN 70+% JASPAR ACAAGCAATTAATGAAT 85.5% identity Open · Scan
M05392_2.00 NN 70+% CisBP GTTAAGTGC 81.7% identity Open · Scan
M03234_2.00 NN 70+% CisBP TTTTAATTGGT 74.4% identity Open · Scan
MA0897.1 NN 70+% JASPAR ACAAGCAATTAAAGAAT 74.4% identity Open · Scan
Nearest Neighbor (70% - 40%)87
MotifPredictionSourceDNA bindingSupportLogoActions
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 67.8% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 67.8% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 65.7% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 65.7% identity Open · Scan
MA0708.1 NN 70-40% JASPAR CCAATTAA 62.5% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 61.6% identity Open · Scan
M00526_2.00 NN 70-40% CisBP ATTAATTA 61.1% identity Open · Scan
MA1577.1 NN 70-40% JASPAR CTAATTAG 61.1% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 60.6% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 60.0% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 59.0% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 58.6% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 58.3% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 58.3% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 58.2% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 58.2% identity Open · Scan
MA0709.1 NN 70-40% JASPAR CCAATTAA 57.9% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 57.1% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 56.6% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 56.6% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 56.3% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 55.5% identity Open · Scan
MA0666.1 NN 70-40% JASPAR CCAATTAG 55.1% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 55.0% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 55.0% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 54.3% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 54.3% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 54.3% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 54.3% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 54.2% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 54.2% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 54.2% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 54.2% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 54.2% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 54.2% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 54.2% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 54.2% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 53.8% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 53.6% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 53.6% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 53.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 53.6% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 53.5% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 53.3% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 53.3% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 53.3% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 53.3% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 53.3% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 53.0% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 52.8% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 52.7% identity Open · Scan
M02164_2.00 NN 70-40% CisBP GTAATGGGCT 52.6% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 52.5% identity Open · Scan
M05003_2.00 NN 70-40% CisBP ATAACGAC 52.5% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 52.5% identity Open · Scan
MA0881.1 NN 70-40% JASPAR CCAATTAC 52.5% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 52.4% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 52.4% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 51.8% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 51.8% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 51.7% identity Open · Scan
M02210_2.00 NN 70-40% CisBP AAGTACTTAA 51.7% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 51.6% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 51.5% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 51.5% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 51.4% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 50.9% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 50.9% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 50.9% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 50.9% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 50.8% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 50.8% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 50.8% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 50.8% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 50.8% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 50.8% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 50.6% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 50.5% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 50.0% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 50.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 50.0% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 50.0% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 50.0% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 50.0% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 50.0% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 50.0% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 348 aa
199-260

Region 199-260 0 PWM

Residues
62 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 199-2601 model
Actions
Predicted = Low DIMER_Q9NP08:199:260_5zjt_A_1 5zjt 199-260 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
204-260PF00046Homeodomainoverlaps 199-260