Region 91-175 3 PWM
- Residues
- 85 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 1CKT, 1J5N, 2GZK, 4QR9
- Sources
- Predicted = Low
Transcription factor
Q9NP66 - HMG20A
High mobility group protein 20A (HMG box-containing protein 20A) (HMG domain-containing protein 1) (HMG domain-containing protein HMGX1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 347 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02487_2.00 | NN 70-40% | CisBP | TTATTATATAT | 53.1% identity | Open · Scan |
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q9NP66_HM20A_HUMAN:103:170_1ckt_A_1 | ModCRE | Homology model | GGGATAGAGATTTTT | Region 103-170 · 1 3D model | Open · Scan | |
| TFS_sp_Q9NP66_HM20A_HUMAN:91:175_1j5n_A_1 | ModCRE | Homology model | GGGGGGATTGTTCAG | Region 91-175 · 1 3D model | Open · Scan | |
| TFS_sp_Q9NP66_HM20A_HUMAN:94:171_2gzk_A_1 | ModCRE | Homology model | GGGTTTCCCCCTTC | Region 94-171 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
347 aa
91-175
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 91-1755 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q9NP66_HM20A_HUMAN:103:170_1ckt_A_1 | 1ckt | 103-170 | View model · PDB |
| Predicted = Low | TFS_sp_Q9NP66_HM20A_HUMAN:103:170_4qr9_A_1 | 4qr9 | 103-170 | View model · PDB |
| Predicted = Low | TFS_sp_Q9NP66_HM20A_HUMAN:103:170_4qr9_B_1 | 4qr9 | 103-170 | View model · PDB |
| Predicted = Low | TFS_sp_Q9NP66_HM20A_HUMAN:91:175_1j5n_A_1 | 1j5n | 91-175 | View model · PDB |
| Predicted = Low | TFS_sp_Q9NP66_HM20A_HUMAN:94:171_2gzk_A_1 | 2gzk | 94-171 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1j5n | 91:186 | 91 | 175 | P:A · DNA:B,C | 40.0% / 61.2% | 91 | View · PDB TFS_sp_Q9NP66_HM20A_HUMAN:91:175_1j5n_A_1 |
| 5 | 2gzk | 91:186 | 94 | 171 | P:A · DNA:B,C | 30.8% / 57.7% | 49 | View · PDB TFS_sp_Q9NP66_HM20A_HUMAN:94:171_2gzk_A_1 |
| 2 | 1ckt | 91:186 | 103 | 170 | P:A · DNA:B,C | 30.0% / 52.9% | 95 | View · PDB TFS_sp_Q9NP66_HM20A_HUMAN:103:170_1ckt_A_1 |
| 3 | 4qr9 | 91:186 | 103 | 170 | P:B · DNA:C,D,E,F | 30.0% / 52.9% | 90 | View · PDB TFS_sp_Q9NP66_HM20A_HUMAN:103:170_4qr9_B_1 |
| 4 | 4qr9 | 91:186 | 103 | 170 | P:A · DNA:C,D,E,F | 30.0% / 52.9% | 90 | View · PDB TFS_sp_Q9NP66_HM20A_HUMAN:103:170_4qr9_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 103-170 | PF00505 | HMG (high mobility group) box | overlaps 91-175 |