ModCRE DB

Transcription factor

Q9NQ69 - LHX9

LIM/homeobox protein Lhx9 (LIM homeobox protein 9)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 397 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0701.1 Known JASPAR CCAATTAA Direct PWM Open · Scan
MA0701.2 Known JASPAR CTAATTAA Direct PWM Open · Scan
MA0701.3 Known JASPAR CTAATTA Direct PWM Open · Scan
M01505_2.00 Known CisBP CTAATTAGC Direct PWM Open · Scan
M01506_2.00 Known CisBP CTAATTAGC Direct PWM Open · Scan
M03163_2.00 Known CisBP TTAATTGG Direct PWM Open · Scan
M03164_2.00 Known CisBP TAATTGGCAATTA Direct PWM Open · Scan
M05170_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M05171_2.00 Known CisBP TTAATTAG Direct PWM Open · Scan
M05172_2.00 Known CisBP CTAACGAG Direct PWM Open · Scan
M05173_2.00 Known CisBP TTAATTAG Direct PWM Open · Scan
M05174_2.00 Known CisBP TTAATTAG Direct PWM Open · Scan
M05175_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 397 aa
266-324

Region 266-324 0 PWM

Residues
59 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 266-3241 model
Actions
Predicted = Low DIMER_Q9NQ69:266:324_1fjl_A_1 1fjl 266-324 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
71-128PF00412LIM domainNo overlap with loaded model regions
133-189PF00412LIM domainNo overlap with loaded model regions
268-324PF00046Homeodomainoverlaps 266-324