ModCRE DB

Transcription factor

Q9NR11 - ZNF302

Zinc finger protein 302 (Zinc finger protein 135-like) (Zinc finger protein 140-like) (Zinc finger protein 327)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 478 aa

91 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07570_2.00 Known CisBP AGTTGAGTGACTGCGGTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)86
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 66.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 64.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 61.7% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 61.6% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 61.1% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 60.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 60.1% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 59.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 58.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.7% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 56.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.1% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 56.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.9% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 55.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 54.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.5% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 54.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.4% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 54.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.9% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 53.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.6% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 53.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.2% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 53.2% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 53.0% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 53.0% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.9% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.9% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 52.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.4% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.4% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 52.2% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 52.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.2% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 52.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.9% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.6% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.4% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 51.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.9% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 50.8% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 50.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.6% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.5% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.5% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.2% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 50.2% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9NR11_ZN302_HUMAN:306:355_1llm_D_1 ModCRE Homology model CCCGCGCGCGAA Region 306-355 · 1 3D model Open · Scan
TFS_sp_Q9NR11_ZN302_HUMAN:280:387_5eh2_F_1 ModCRE Homology model CCCCGGGGGGCCGGGGGTG Region 280-387 · 1 3D model Open · Scan
TFS_sp_Q9NR11_ZN302_HUMAN:285:386_2jp9_A_1 ModCRE Homology model CCGGGGGGCCCCCGGGA Region 285-386 · 1 3D model Open · Scan
TFS_sp_Q9NR11_ZN302_HUMAN:333:443_5egb_A_1 ModCRE Homology model TTTAGCCCGGGGGTGGGG Region 333-443 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 478 aa
199-471

Region 199-471 4 PWM

Residues
273 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 2JP9, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 6 summary rows
Region 199-4719 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9NR11_ZN302_HUMAN:306:355_1llm_D_1 1llm 306-355 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:199:471_5v3j_E_1 5v3j 199-471 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:199:471_5v3m_C_1 5v3m 199-471 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:240:471_5wjq_D_1 5wjq 240-471 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:280:387_5eh2_F_1 5eh2 280-387 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:285:386_2jp9_A_1 2jp9 285-386 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:289:442_2i13_A_1 2i13 289-442 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:333:443_5egb_A_1 5egb 333-443 View model · PDB
Predicted = Low TFS_sp_Q9NR11_ZN302_HUMAN:333:443_5ei9_E_1 5ei9 333-443 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 199:472 333 443 P:E · DNA:A,B 57.7% / 69.4% 100 View · PDB TFS_sp_Q9NR11_ZN302_HUMAN:333:443_5ei9_E_1
4 2i13 199:472 289 442 P:A · DNA:C,D 55.8% / 68.2% 100 View · PDB TFS_sp_Q9NR11_ZN302_HUMAN:289:442_2i13_A_1
1 5wjq 199:472 240 471 P:D · DNA:A,B 46.4% / 64.4% 82 View · PDB TFS_sp_Q9NR11_ZN302_HUMAN:240:471_5wjq_D_1
2 5v3m 199:472 199 471 P:C · DNA:A,B 42.5% / 56.7% 98 View · PDB TFS_sp_Q9NR11_ZN302_HUMAN:199:471_5v3m_C_1
3 5v3j 199:472 199 471 P:E · DNA:A,B 42.5% / 56.7% 98 View · PDB TFS_sp_Q9NR11_ZN302_HUMAN:199:471_5v3j_E_1
1 1llm 199:472 306,306 355,355 P:C,D · DNA:A,B 40.0% / 58.0% 57,58 View · PDB DIMER_sp_Q9NR11_ZN302_HUMAN:306:355_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
280-302PF00096Zinc finger, C2H2 typeoverlaps 199-471
308-330PF00096Zinc finger, C2H2 typeoverlaps 199-471
336-358PF00096Zinc finger, C2H2 typeoverlaps 199-471
364-386PF00096Zinc finger, C2H2 typeoverlaps 199-471
392-414PF00096Zinc finger, C2H2 typeoverlaps 199-471
420-442PF00096Zinc finger, C2H2 typeoverlaps 199-471
448-470PF00096Zinc finger, C2H2 typeoverlaps 199-471