Transcription factor

Q9NR94

Zinc finger protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 686 aa

100 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)95

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	68.2% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	68.2% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	68.2% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	67.8% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	67.0% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	65.4% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	64.7% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	64.7% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	64.7% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	64.7% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	62.3% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	60.0% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	59.6% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	59.2% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	59.2% identity		Open · Scan
M08399_2.00	NN 70-40%	CisBP	TACTCTGGGGCCACATGACTC	58.9% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	58.7% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	58.6% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	58.6% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	58.5% identity		Open · Scan
M07654_2.00	NN 70-40%	CisBP	TGCCCCCTGGTGGC	57.6% identity		Open · Scan
M08935_2.00	NN 70-40%	CisBP	CCTCCTCCCTCAGACC	57.5% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	57.4% identity		Open · Scan
M07761_2.00	NN 70-40%	CisBP	CTGATTATTCACCCA	56.8% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	56.7% identity		Open · Scan
M07764_2.00	NN 70-40%	CisBP	CTGCACTCTCCCCTTCCCCCCCTCCCC	56.6% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	56.6% identity		Open · Scan
M04610_2.00	NN 70-40%	CisBP	CGGCGACGCGAACAC	56.5% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	56.2% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	56.1% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	55.4% identity		Open · Scan
M08311_2.00	NN 70-40%	CisBP	CTGGAACAGAAGGGGCGA	55.4% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	55.3% identity		Open · Scan
M07714_2.00	NN 70-40%	CisBP	AGCCCATTGGGGCCTATGCCC	55.3% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	55.2% identity		Open · Scan
M07679_2.00	NN 70-40%	CisBP	TGCGATCTC	55.2% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	55.2% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	55.1% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	55.0% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	54.9% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	54.8% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	54.5% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	54.2% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	54.2% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	54.2% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	54.1% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	54.0% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	53.9% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	53.9% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	53.9% identity		Open · Scan
M07683_2.00	NN 70-40%	CisBP	GTGGGAAAGCCT	53.7% identity		Open · Scan
MA1601.1	NN 70-40%	JASPAR	ATGTGGGAAA	53.7% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	53.6% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	53.4% identity		Open · Scan
M07566_2.00	NN 70-40%	CisBP	TCAAACCATCCTTGC	53.4% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	53.4% identity		Open · Scan
M08908_2.00	NN 70-40%	CisBP	GCTGCTGCTTCTGCTG	53.4% identity		Open · Scan
MA1154.1	NN 70-40%	JASPAR	CTTTCCCACAACACGAC	53.4% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	53.3% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	53.1% identity		Open · Scan
M01538_2.00	NN 70-40%	CisBP	GCCCCTGA	53.1% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	53.1% identity		Open · Scan
M01456_2.00	NN 70-40%	CisBP	GTGATCGGCG	52.8% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	52.8% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	52.8% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	52.6% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	52.6% identity		Open · Scan
M00142_2.00	NN 70-40%	CisBP	GTGCTCCT	52.5% identity		Open · Scan
M00134_2.00	NN 70-40%	CisBP	GCCACGCCCA	52.4% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	52.4% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	52.2% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	52.1% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	52.0% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	52.0% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	51.8% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	51.6% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	51.5% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	51.3% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	51.1% identity		Open · Scan
M07684_2.00	NN 70-40%	CisBP	CCTGTTCTTGACTTT	51.1% identity		Open · Scan
M00764_2.00	NN 70-40%	CisBP	GTCTACAC	51.0% identity		Open · Scan
MA1646.1	NN 70-40%	JASPAR	AAACAGAAGCAG	51.0% identity		Open · Scan
M07729_2.00	NN 70-40%	CisBP	CCAGACTGCCTGCCAAAACCCCCT	50.6% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	50.5% identity		Open · Scan
M00609_2.00	NN 70-40%	CisBP	GGAAGCCCTA	50.4% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	50.4% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	50.4% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	50.4% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	50.2% identity		Open · Scan
M00132_2.00	NN 70-40%	CisBP	TGCTACCGTT	50.0% identity		Open · Scan
M00618_2.00	NN 70-40%	CisBP	TGCTACCGT	50.0% identity		Open · Scan
M01457_2.00	NN 70-40%	CisBP	GCGCACGGAC	50.0% identity		Open · Scan
M01540_2.00	NN 70-40%	CisBP	CTCCCCC	50.0% identity		Open · Scan
M06179_2.00	NN 70-40%	CisBP	TAAGCCTATAGA	50.0% identity		Open · Scan
M10303_2.00	NN 70-40%	CisBP	TACTGGGAATACC	50.0% identity		Open · Scan

ModCRE5

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_tr_Q9NR94_Q9NR94_HUMAN:244:295_1llm_D_1	ModCRE	Homology model	GCCGCGCGCGGA	Region 244-295 · 1 3D model		Open · Scan
TFS_tr_Q9NR94_Q9NR94_HUMAN:199:352_2i13_A_1	ModCRE	Homology model	TTACACAGTAAACTTCGTCAT	Region 199-352 · 1 3D model		Open · Scan
TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3j_E_1	ModCRE	Homology model	CTGGAGGCCGTGGGCCGGGGCGGGAA	Region 245-521 · 1 3D model		Open · Scan
TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3m_C_1	ModCRE	Homology model	TGGCCACCCCGGGCCCCCCCCCCCGT	Region 245-521 · 1 3D model		Open · Scan
TFS_tr_Q9NR94_Q9NR94_HUMAN:271:549_5wjq_D_1	ModCRE	Homology model	CTGGAAAGGGGCCCCCCCCCCGTTGTAC	Region 271-549 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 686 aa

199-549

Region 199-549 5 PWM

Residues

351 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

6 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

6 active PDB models 6 summary rows

Region 199-5496 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_Q9NR94_Q9NR94_HUMAN:244:295_1llm_D_1	1llm	244-295	View model · PDB
Predicted = Low	TFS_tr_Q9NR94_Q9NR94_HUMAN:199:352_2i13_A_1	2i13	199-352	View model · PDB
Predicted = Low	TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3j_E_1	5v3j	245-521	View model · PDB
Predicted = Low	TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3m_C_1	5v3m	245-521	View model · PDB
Predicted = Low	TFS_tr_Q9NR94_Q9NR94_HUMAN:246:544_7w1m_H_1	7w1m	246-544	View model · PDB
Predicted = Low	TFS_tr_Q9NR94_Q9NR94_HUMAN:271:549_5wjq_D_1	5wjq	271-549	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
4	2i13	199:662	199	352	P:A · DNA:C,D	60.4% / 71.4%	100	View · PDB TFS_tr_Q9NR94_Q9NR94_HUMAN:199:352_2i13_A_1
1	5wjq	199:662	271	549	P:D · DNA:A,B	53.8% / 71.0%	99	View · PDB TFS_tr_Q9NR94_Q9NR94_HUMAN:271:549_5wjq_D_1
2	5v3m	199:662	245	521	P:C · DNA:A,B	53.4% / 69.7%	100	View · PDB TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3m_C_1
3	5v3j	199:662	245	521	P:E · DNA:A,B	53.4% / 69.7%	100	View · PDB TFS_tr_Q9NR94_Q9NR94_HUMAN:245:521_5v3j_E_1
1	1llm	199:662	244,244	295,295	P:C,D · DNA:A,B	48.1% / 65.4%	59,61	View · PDB DIMER_tr_Q9NR94_Q9NR94_HUMAN:244:295_1llm_D_1
5	7w1m	199:662	246	544	P:H · DNA:F,G	36.0% / 51.6%	92	View · PDB TFS_tr_Q9NR94_Q9NR94_HUMAN:246:544_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
135-155	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
191-212	PF00096	Zinc finger, C2H2 type	overlaps 199-549
218-240	PF00096	Zinc finger, C2H2 type	overlaps 199-549
246-268	PF00096	Zinc finger, C2H2 type	overlaps 199-549
274-296	PF00096	Zinc finger, C2H2 type	overlaps 199-549
302-324	PF00096	Zinc finger, C2H2 type	overlaps 199-549
330-352	PF00096	Zinc finger, C2H2 type	overlaps 199-549
358-380	PF00096	Zinc finger, C2H2 type	overlaps 199-549
386-408	PF00096	Zinc finger, C2H2 type	overlaps 199-549
414-436	PF00096	Zinc finger, C2H2 type	overlaps 199-549
442-464	PF00096	Zinc finger, C2H2 type	overlaps 199-549
470-492	PF00096	Zinc finger, C2H2 type	overlaps 199-549
498-520	PF00096	Zinc finger, C2H2 type	overlaps 199-549
526-548	PF00096	Zinc finger, C2H2 type	overlaps 199-549
554-576	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
582-604	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
610-632	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
638-660	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions