ModCRE DB

Transcription factor

Q9NS42 - ZNF233

UniProtKB entry deleted

82 Generated PWM 15 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)69
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 65.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 65.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 58.9% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 58.9% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 57.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 57.2% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 57.2% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 57.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.4% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 55.7% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.1% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 55.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.9% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.9% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 53.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 53.7% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.6% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.4% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.9% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.7% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 52.6% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.3% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.1% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 51.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 51.6% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.5% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 51.3% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.3% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 51.3% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 51.2% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 51.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.6% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 50.6% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.6% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.6% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 50.6% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 50.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.0% identity Open · Scan
MA0740.1 NN 70-40% JASPAR GGCCACGCCCCCTT 50.0% identity Open · Scan
MA1517.1 NN 70-40% JASPAR GGCCACGCCCA 50.0% identity Open · Scan
ModCRE13
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5v3j_E_1 ModCRE Homology model AGGGGGGCCTCCCCGCTTTGAC Region 199-361 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5v3m_C_1 ModCRE Homology model GGGTGAGTTTTTGGACATGACA Region 199-361 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5wjq_D_1 ModCRE Homology model GGGGGGGAAATAGGCTTTGCAT Region 199-361 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:244:370_2i13_A_1 ModCRE Homology model ACACTTATAGTACTCCCCAAA Region 244-370 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:265:361_5ei9_E_1 ModCRE Homology model AGCAGAAAGGGGCAA Region 265-361 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:377:643_5wjq_D_1 ModCRE Homology model ACGATGCCCCCAACACCACGCGGACCCC Region 377-643 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3j_E_1 ModCRE Homology model TCCCAGGGGCCGGCCCGGCCCTCC Region 381-643 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3m_C_1 ModCRE Homology model CGGCCCCCGCCCCCCCGTCGCCCCC Region 381-643 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:431:540_2jpa_A_1 ModCRE Homology model GAGCGGGGGGGACC Region 431-540 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:471:624_2i13_A_1 ModCRE Homology model AATTAAAGAGAAAAAGAGTAG Region 471-624 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:515:625_5egb_A_1 ModCRE Homology model CGGGGAAACGGGGGGGGG Region 515-625 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:515:625_5ei9_E_1 ModCRE Homology model CCCGAGGGGTGGGGGCC Region 515-625 · 1 3D model Open · Scan
TFS_tr_Q9NS42_Q9NS42_HUMAN:517:625_5eh2_F_1 ModCRE Homology model CCGGAAGGAGGGGGGGTAA Region 517-625 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 199-370 5 PWM

Residues
172 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
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Region 377-644 8 PWM

Residues
268 aa
Domains
No overlapping PFAM annotation recorded
3D models
10 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 2JPA, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
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3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
15 active PDB models 6 summary rows
Region 199-3705 models
Actions
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5v3j_E_1 5v3j 199-361 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5v3m_C_1 5v3m 199-361 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:199:361_5wjq_D_1 5wjq 199-361 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:244:370_2i13_A_1 2i13 244-370 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:265:361_5ei9_E_1 5ei9 265-361 View model · PDB
Region 377-64410 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q9NS42_Q9NS42_HUMAN:460:511_1llm_D_1 1llm 460-511 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:377:643_5wjq_D_1 5wjq 377-643 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3j_E_1 5v3j 381-643 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3m_C_1 5v3m 381-643 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:381:644_7w1m_H_1 7w1m 381-644 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:431:540_2jpa_A_1 2jpa 431-540 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:471:624_2i13_A_1 2i13 471-624 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:515:625_5egb_A_1 5egb 515-625 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:515:625_5ei9_E_1 5ei9 515-625 View model · PDB
Predicted = Low TFS_tr_Q9NS42_Q9NS42_HUMAN:517:625_5eh2_F_1 5eh2 517-625 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 377:644 471 624 P:A · DNA:C,D 62.3% / 67.5% 100 View · PDB TFS_tr_Q9NS42_Q9NS42_HUMAN:471:624_2i13_A_1
2 5v3m 377:644 381 643 P:C · DNA:A,B 49.8% / 62.6% 94 View · PDB TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3m_C_1
3 5v3j 377:644 381 643 P:E · DNA:A,B 49.8% / 62.6% 94 View · PDB TFS_tr_Q9NS42_Q9NS42_HUMAN:381:643_5v3j_E_1
1 5wjq 377:644 377 643 P:D · DNA:A,B 49.4% / 63.6% 95 View · PDB TFS_tr_Q9NS42_Q9NS42_HUMAN:377:643_5wjq_D_1
1 1llm 377:644 460,460 511,511 P:C,D · DNA:A,B 46.2% / 69.2% 59,61 View · PDB DIMER_tr_Q9NS42_Q9NS42_HUMAN:460:511_1llm_D_1
5 7w1m 377:644 381 644 P:H · DNA:F,G 35.4% / 48.3% 81 View · PDB TFS_tr_Q9NS42_Q9NS42_HUMAN:381:644_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags9
BolAPHF5XPA_Nzf-C2H2zf-C2H2_4zf-C2H2_6zf-C2H2_jazzf-H2C2_2zf-met