ModCRE DB

Transcription factor

Q9NSC2 - SALL1

Sal-like protein 1 (Spalt-like transcription factor 1) (Zinc finger protein 794) (Zinc finger protein SALL1) (Zinc finger protein Spalt-1) (HSal1) (Sal-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1324 aa

25 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08979_2.00 NN 70+% CisBP CCCACCCTCC 80.5% identity Open · Scan
Nearest Neighbor (70% - 40%)24
MotifPredictionSourceDNA bindingSupportLogoActions
M09002_2.00 NN 70-40% CisBP CCACCTGG 59.1% identity Open · Scan
MA1558.1 NN 70-40% JASPAR GGCAGGTGCA 59.1% identity Open · Scan
M02108_2.00 NN 70-40% CisBP CCTAATTAG 58.3% identity Open · Scan
MA1655.1 NN 70-40% JASPAR GGGAACAGCCAC 57.1% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 56.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.6% identity Open · Scan
M08397_2.00 NN 70-40% CisBP ATGCAACAGGTG 55.7% identity Open · Scan
MA0743.1 NN 70-40% JASPAR GAGCAACAGGTGGTT 55.7% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 55.7% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 54.9% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 52.9% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 52.8% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.1% identity Open · Scan
M00632_2.00 NN 70-40% CisBP ACACGCCCCT 51.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.9% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 50.9% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 50.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 50.9% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.8% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M03583_2.00 NN 70-40% CisBP GGATGCTGTG 50.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
MA0733.1 NN 70-40% JASPAR TTACGCCCACGCATTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1324 aa
1132-1185

Region 1132-1185 0 PWM

Residues
54 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
1JK1
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1132-11851 model
Actions
Predicted = Low TFS_Q9NSC2:1132:1185_1jk1_A_1 1jk1 1132-1185 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
477-499PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
734-756PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
766-788PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1003-1023PF12874Zinc-finger of C2H2 typeNo overlap with loaded model regions
1029-1051PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1134-1156PF00096Zinc finger, C2H2 typeoverlaps 1132-1185
1162-1184PF00096Zinc finger, C2H2 typeoverlaps 1132-1185