ModCRE DB

Transcription factor

Q9NSD4 - ZNF275

Zinc finger protein 275

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 429 aa

38 Generated PWM 15 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)29
MotifPredictionSourceDNA bindingSupportLogoActions
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.4% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 56.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 56.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 56.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 55.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 55.2% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 54.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 53.9% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 53.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 52.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.2% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 51.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 50.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9NSD4_ZN275_HUMAN:103:151_3uk3_C_1 ModCRE Homology model GTGCAGAGAAT Region 103-151 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:103:151_4is1_C_1 ModCRE Homology model TCGCAAAGAAT Region 103-151 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:103:166_5yj3_C_1 ModCRE Homology model CGAACC Region 103-166 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:151_4gzn_C_1 ModCRE Homology model CCGTAAGGGA Region 98-151 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:151_4m9v_C_1 ModCRE Homology model CTAGAAGACC Region 98-151 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5egb_A_1 ModCRE Homology model TACACCCGGAGTGGAC Region 98-156 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5eh2_F_1 ModCRE Homology model CTAGCCGGGTGGCCT Region 98-156 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5ei9_E_1 ModCRE Homology model TCGCCGCGGGTGGGG Region 98-156 · 1 3D model Open · Scan
TFS_sp_Q9NSD4_ZN275_HUMAN:98:160_2i13_A_1 ModCRE Homology model AATTTCCTTTAGGGCCC Region 98-160 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 429 aa
98-166
169-429

Region 98-166 9 PWM

Residues
69 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs
Templates
2I13, 3UK3, 4GZN, 4IS1, 4M9V, 5EGB, 5EH2, 5EI9, ...
Sources
Predicted = Low
Scan this region Show models

Region 169-429 0 PWM

Residues
261 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
15 active PDB models 6 summary rows
Region 98-1669 models
Actions
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:103:151_3uk3_C_1 3uk3 103-151 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:103:151_4is1_C_1 4is1 103-151 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:103:166_5yj3_C_1 5yj3 103-166 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:151_4gzn_C_1 4gzn 98-151 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:151_4m9v_C_1 4m9v 98-151 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5egb_A_1 5egb 98-156 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5eh2_F_1 5eh2 98-156 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:156_5ei9_E_1 5ei9 98-156 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:98:160_2i13_A_1 2i13 98-160 View model · PDB
Region 169-4296 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9NSD4_ZN275_HUMAN:291:342_1llm_D_1 1llm 291-342 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:169:429_7w1m_H_1 7w1m 169-429 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5v3j_E_1 5v3j 179-427 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5v3m_C_1 5v3m 179-427 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5wjq_D_1 5wjq 179-427 View model · PDB
Predicted = Low TFS_sp_Q9NSD4_ZN275_HUMAN:280:427_2i13_A_1 2i13 280-427 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 169:429 280 427 P:A · DNA:C,D 53.4% / 68.2% 96 View · PDB TFS_sp_Q9NSD4_ZN275_HUMAN:280:427_2i13_A_1
1 5wjq 169:429 179 427 P:D · DNA:A,B 48.2% / 65.1% 88 View · PDB TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5wjq_D_1
2 5v3m 169:429 179 427 P:C · DNA:A,B 48.2% / 65.1% 89 View · PDB TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5v3m_C_1
3 5v3j 169:429 179 427 P:E · DNA:A,B 48.2% / 65.1% 89 View · PDB TFS_sp_Q9NSD4_ZN275_HUMAN:179:427_5v3j_E_1
1 1llm 169:429 291,291 342,342 P:C,D · DNA:A,B 48.1% / 57.7% 59,61 View · PDB DIMER_sp_Q9NSD4_ZN275_HUMAN:291:342_1llm_D_1
5 7w1m 169:429 169 429 P:H · DNA:F,G 30.8% / 47.0% 81 View · PDB TFS_sp_Q9NSD4_ZN275_HUMAN:169:429_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
101-123PF00096Zinc finger, C2H2 typeoverlaps 98-166
130-151PF00096Zinc finger, C2H2 typeoverlaps 98-166
181-203PF00096Zinc finger, C2H2 typeoverlaps 169-429
209-231PF00096Zinc finger, C2H2 typeoverlaps 169-429
265-287PF00096Zinc finger, C2H2 typeoverlaps 169-429
295-315PF00096Zinc finger, C2H2 typeoverlaps 169-429
321-343PF00096Zinc finger, C2H2 typeoverlaps 169-429
349-371PF00096Zinc finger, C2H2 typeoverlaps 169-429
377-399PF00096Zinc finger, C2H2 typeoverlaps 169-429
406-427PF00096Zinc finger, C2H2 typeoverlaps 169-429