ModCRE DB

Transcription factor

Q9NSJ1 - ZNF355P

Putative zinc finger protein 355P (Zinc finger protein ZnFP01)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 428 aa

63 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)58
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 63.1% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 61.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 60.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 59.9% identity Open · Scan
M04524_2.00 NN 70-40% CisBP TAAATCACTGCATTTCACTCA 59.2% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 59.2% identity Open · Scan
MA0483.1 NN 70-40% JASPAR AAATCACAGCA 59.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 58.6% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 57.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 56.8% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 56.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 55.5% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 55.3% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 55.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 54.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 53.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.8% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 52.7% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 52.5% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 52.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 51.7% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 51.5% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 51.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.1% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 50.5% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 50.4% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.4% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 50.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9NSJ1_Z355P_HUMAN:247:313_1a1g_A_1 ModCRE Homology model GGGGGGCCCC Region 247-313 · 1 3D model Open · Scan
TFS_sp_Q9NSJ1_Z355P_HUMAN:247:313_5keb_A_1 ModCRE Homology model GGCCCGGGTT Region 247-313 · 1 3D model Open · Scan
TFS_sp_Q9NSJ1_Z355P_HUMAN:260:316_4gzn_C_1 ModCRE Homology model TTAAGAGATA Region 260-316 · 1 3D model Open · Scan
TFS_sp_Q9NSJ1_Z355P_HUMAN:260:316_4m9v_C_1 ModCRE Homology model TTACGAGAGT Region 260-316 · 1 3D model Open · Scan
TFS_sp_Q9NSJ1_Z355P_HUMAN:261:314_1f2i_H_1 ModCRE Homology model AGGGTCTCCCA Region 261-314 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 428 aa
70-386

Region 70-386 5 PWM

Residues
317 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1A1G, 1F2I, 1LLM, 2I13, 4GZN, 4M9V, 5KEB, 5V3J, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 70-38611 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9NSJ1_Z355P_HUMAN:70:118_1llm_D_1 1llm 70-118 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:247:313_1a1g_A_1 1a1g 247-313 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:247:313_5keb_A_1 5keb 247-313 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:260:316_4gzn_C_1 4gzn 260-316 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:260:316_4m9v_C_1 4m9v 260-316 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:261:314_1f2i_H_1 1f2i 261-314 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:71:333_5v3j_E_1 5v3j 71-333 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:71:333_5v3m_C_1 5v3m 71-333 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:72:326_7w1m_H_1 7w1m 72-326 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:81:234_2i13_A_1 2i13 81-234 View model · PDB
Predicted = Low TFS_sp_Q9NSJ1_Z355P_HUMAN:97:386_5wjq_D_1 5wjq 97-386 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 59:413 81 234 P:A · DNA:C,D 50.6% / 59.1% 100 View · PDB TFS_sp_Q9NSJ1_Z355P_HUMAN:81:234_2i13_A_1
1 5v3m 59:413 71 333 P:C · DNA:A,B 47.4% / 67.2% 94 View · PDB TFS_sp_Q9NSJ1_Z355P_HUMAN:71:333_5v3m_C_1
2 5v3j 59:413 71 333 P:E · DNA:A,B 47.4% / 67.2% 94 View · PDB TFS_sp_Q9NSJ1_Z355P_HUMAN:71:333_5v3j_E_1
3 5wjq 59:413 97 386 P:D · DNA:A,B 45.8% / 64.1% 97 View · PDB TFS_sp_Q9NSJ1_Z355P_HUMAN:97:386_5wjq_D_1
1 1llm 59:413 70,70 118,118 P:C,D · DNA:A,B 42.9% / 65.3% 56,57 View · PDB DIMER_sp_Q9NSJ1_Z355P_HUMAN:70:118_1llm_D_1
5 7w1m 59:413 72 326 P:H · DNA:F,G 33.6% / 50.6% 79 View · PDB TFS_sp_Q9NSJ1_Z355P_HUMAN:72:326_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
72-94PF00096Zinc finger, C2H2 typeoverlaps 70-386
100-122PF00096Zinc finger, C2H2 typeoverlaps 70-386
128-150PF00096Zinc finger, C2H2 typeoverlaps 70-386
291-313PF00096Zinc finger, C2H2 typeoverlaps 70-386
335-357PF00096Zinc finger, C2H2 typeoverlaps 70-386
363-384PF00096Zinc finger, C2H2 typeoverlaps 70-386
391-413PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions